Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq310 89.7 4e-13 seq2167 86.0 5e-12 >seq310 Length=2395884 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| |||||||| || ||||| || || || || || |||| |||| Sbjct 1997432 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACTATCACTTTGGAGGTGGAAAGTTCT 1997491 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATCA 111218 ||| | ||| | | || || ||||| || |||||||| | |||| | ||||| Sbjct 1997492 GATACGATTGACAATGTCAAGGCGAAAATCCAGGATAAAGAAGG-GATCCCACCTGATCA 1997550 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 ||| |||||||| | ||| ||||| || | |||||| | || | || |||||||| Sbjct 1997551 ACAGAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGTCGTACACTTGCGGATTATAA 1997610 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| || || ||||| || || || | ||| | ||||| || ||||| Sbjct 1997611 TATCCAGAAGGAATCCACCCTTCACCTTGTGCTTCGTCTTCGTGGTGG 1997658 >seq2167 Length=1051226 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| |||||||| || || ||||| || || || || || |||| ||| Sbjct 204443 AATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACAATCACTTTGGAGGTCGAAAGTTC 204384 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC-GATC 111217 || | | | | | || ||| ||||| ||||||||||| | |||| | || | Sbjct 204383 AGACACAATCGACAACGTTAAAGCCAAAATCCAAGACAAAGAAGG-GATCCCTCCAGACC 204325 Query 111218 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111277 | ||||| || || | ||| || || ||| | |||||| || ||| |||| ||||| | Sbjct 204324 AGCAAAGACTGATCTTTGCCGGAAAGCAACTTGAAGATGGTAGAACATTGGCGGATTACA 204265 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 | || ||||| ||||| || || ||| | |||||||| || | ||||||| Sbjct 204264 ACATTCAAAAGGAATCAACTCTCCATCTTGTGTTGCGGTTGAGGGGTGGCA 204214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421799828497312