Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq109320 140 7e-28 seq273876 104 5e-17 seq94026 104 5e-17 seq66414 104 5e-17 seq51291 104 5e-17 seq11701 104 5e-17 seq6792 104 5e-17 seq120059 98.7 2e-15 seq115302 98.7 2e-15 seq103173 98.7 2e-15 seq87553 98.7 2e-15 seq53878 98.7 2e-15 seq10909 98.7 2e-15 >seq109320 Length=8125 Score = 140 bits (154), Expect = 7e-28 Identities = 314/469 (67%), Gaps = 7/469 (1%) Strand=Plus/Plus Query 230164 GGTAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCC 230223 ||| | || || || ||||| ||| | |||| | || || || || || | || ||| Sbjct 1974 GGTGAGTCCTTCGCGGAGCGCCTCCTGGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCC 2033 Query 230224 GGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTG 230283 || || |||||||||||||| ||||| ||| || | ||||| || ||| | Sbjct 2034 GGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTC 2093 Query 230284 TCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTAT 230343 || |||||| ||||| ||||||||||| ||||| | |||| | || | || Sbjct 2094 TCGAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC 2153 Query 230344 TCAAAGCTCCAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCA 230400 || ||| | |||||||| | |||| | || || ||| | || || Sbjct 2154 TCGCTGCTGCGGAACAAGC---CGAGCGAGGAGCGTGTGAAGGGGATCGTGCGGGAGGCC 2210 Query 230401 GTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAAC 230460 || || | ||| ||||||| | || ||||| | || || ||| | || |||||| Sbjct 2211 GTCGACATCGAGCGGGAGTTCGTCTGCGACGCGCTGCCGTGCGCCCTGGTGGGGATGAAC 2270 Query 230461 GCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGT 230520 || || || || ||| |||||| ||||| |||||||| | | | || || || Sbjct 2271 AGCGACCTGATCGGCAAGTGCATCGAGTTCGTCGCCGACCGGCTGCTCGGCGCGCTCGGC 2330 Query 230521 TACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAA 230580 | | || |||||| || | |||||| || | | ||||||||||| ||||| || Sbjct 2331 TGTGGCAAGGTGTACGACGTGACGAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAG 2390 Query 230581 GGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 |||||||||||||||||||| ||||| ||| | || || ||| |||||| Sbjct 2391 GGGAAGACCAACTTCTTCGAGAAGCGGGTCGGGGAGTACCAGAAGGCCT 2439 >seq273876 Length=3735 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2298 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2357 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2358 CCCACGGTGGGC 2369 >seq94026 Length=19013 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 13260 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13319 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13320 CCCACGGTGGGC 13331 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 13412 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13471 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13472 CCCACGGTGGGC 13483 >seq66414 Length=5141 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 573 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 514 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 513 CCCACGGTGGGC 502 >seq51291 Length=1930 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1365 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1424 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1425 CCCACGGTGGGC 1436 >seq11701 Length=14504 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 10936 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10995 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10996 CCCACGGTGGGC 11007 >seq6792 Length=9215 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 672 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 613 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 612 CCCACGGTGGGC 601 >seq120059 Length=5943 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3120 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3061 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3060 CCCACGGTGGGC 3049 >seq115302 Length=4857 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2854 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2795 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2794 CCCACGGTGGGC 2783 >seq103173 Length=7330 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5711 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5770 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5771 CCCACGGTGGGC 5782 >seq87553 Length=7996 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 159 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 218 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 219 CCCACGGTGGGC 230 >seq53878 Length=5377 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3963 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3904 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3903 CCCACGGTGGGC 3892 >seq10909 Length=9764 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5800 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5859 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5860 CCCACGGTGGGC 5871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1054110363066630