Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq107102 105 6e-18 seq117103 100 2e-16 seq115376 91.5 1e-13 seq112091 91.5 1e-13 >seq107102 Length=7485 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || || ||||| | ||| |||||| ||||| ||||||||||| || ||| Sbjct 4327 AAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAAAGGCTTATCTTTGCTGGGAAA 4268 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| || ||| | ||| |||| |||||||| || |||||||| || ||||||||| Sbjct 4267 CAACTTGAGGATGGTAGGACTTTGGCGGATTACAACATCCAGAAGGAGTCCACTCTTCAC 4208 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 ||||| | ||| | | ||||| Sbjct 4207 TTGGTGCTGCGACTGAGGGGAGG 4185 >seq117103 Length=17306 Score = 100 bits (110), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || || ||||| | ||| |||||| ||||| ||||||||||| || ||| Sbjct 8629 AAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAAAGGCTTATCTTTGCTGGGAAA 8570 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| || ||| | ||| |||| ||||| || || |||||||| || ||||||||| Sbjct 8569 CAACTTGAGGATGGTAGGACTTTGGCAGATTATAACATCCAGAAGGAGTCCACTCTTCAC 8510 Query 29166 ATGGTGTTACGATTACGAGGAGGG 29189 ||||| | ||| | |||| ||| Sbjct 8509 TTGGTGCTGCGACT--GAGGGGGG 8488 >seq115376 Length=10371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | || ||||| || || ||| ||| |||| | | Sbjct 6755 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 6814 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || || | || | || |||||| || || ||||| | || || || Sbjct 6815 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 6874 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| ||||| || ||||||||| | ||| |||||||||| || Sbjct 6875 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 6934 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| || || || ||| ||||| Sbjct 6935 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 6964 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/132 (74%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||||| | || || ||||| | || ||| || || || ||||||||||| Sbjct 7062 AAGCAAAAA-TCCAGGACAAGGAAGGCATCCCTCCAGACCAGCAGAGGCTTATCTTTGCT 7120 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 ||||| || ||||||||| | ||| |||| ||||| || ||||||||||| || || Sbjct 7121 GGCAAGCAGCTGGAAGATGGCCGAACCTTGGCTGATTATAACATTCAGAAGGAGTCCACC 7180 Query 29160 CTTCACATGGTG 29171 || ||| ||||| Sbjct 7181 CTCCACTTGGTG 7192 >seq112091 Length=14418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||| | || ||||| || || ||| ||| |||| | | Sbjct 12931 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 12872 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || || | || | || |||||| || || ||||| | || || || Sbjct 12871 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 12812 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| ||||| || ||||||||| | ||| |||||||||| || Sbjct 12811 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 12752 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| || || || ||| ||||| Sbjct 12751 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 12722 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/132 (74%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||||| | || || ||||| | || ||| || || || ||||||||||| Sbjct 12624 AAGCAAAAA-TCCAGGACAAGGAAGGCATCCCTCCAGACCAGCAGAGGCTTATCTTTGCT 12566 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 ||||| || ||||||||| | ||| |||| ||||| || ||||||||||| || || Sbjct 12565 GGCAAGCAGCTGGAAGATGGCCGAACCTTGGCTGATTATAACATTCAGAAGGAGTCCACC 12506 Query 29160 CTTCACATGGTG 29171 || ||| ||||| Sbjct 12505 CTCCACTTGGTG 12494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426905620249655