Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq107102 96.9 3e-15 seq117103 91.5 1e-13 seq115376 84.2 2e-11 seq112091 84.2 2e-11 >seq107102 Length=7485 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || || ||||| | ||| |||||| ||||| ||||||||||| || ||| Sbjct 4327 AAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAAAGGCTTATCTTTGCTGGGAAA 4268 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | || ||| | ||| |||| |||||||| || || ||||| || ||||||||| Sbjct 4267 CAACTTGAGGATGGTAGGACTTTGGCGGATTACAACATCCAGAAGGAGTCCACTCTTCAC 4208 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 ||||| | ||| | | ||||| Sbjct 4207 TTGGTGCTGCGACTGAGGGGAGG 4185 >seq117103 Length=17306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || || ||||| | ||| |||||| ||||| ||||||||||| || ||| Sbjct 8629 AAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAAAGGCTTATCTTTGCTGGGAAA 8570 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | || ||| | ||| |||| ||||| || || || ||||| || ||||||||| Sbjct 8569 CAACTTGAGGATGGTAGGACTTTGGCAGATTATAACATCCAGAAGGAGTCCACTCTTCAC 8510 Query 25239 ATGGTGTTACGATTACGAGGAGGG 25262 ||||| | ||| | |||| ||| Sbjct 8509 TTGGTGCTGCGACT--GAGGGGGG 8488 >seq115376 Length=10371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || ||||| ||| | || || || ||||| || |||||||| || ||| Sbjct 7751 AAAATTCAGGACAAAGAGGGTATTCCTCCGGACCAGCAAAGGCTGATCTTTGCTGGTAAA 7810 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | |||||| || || ||||||| ||||| || ||||||||||| || |||||| Sbjct 7811 CAACTTGAAGATGGCAGGACATTGGCCGACTACAACATCCAAAAGGAATCGACCCTTCAC 7870 Query 25239 ATGGTGTTACG 25249 | || |||| Sbjct 7871 CTTGTCCTACG 7881 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| | || ||||| || || ||| ||| |||| | | Sbjct 6755 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 6814 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || || | || | || |||||| || || ||||| | || || || Sbjct 6815 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 6874 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| ||||| || |||||||| | ||| |||||||||| || Sbjct 6875 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 6934 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| ||||| || || || ||| ||||| Sbjct 6935 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 6964 >seq112091 Length=14418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || ||||| ||| | || || || ||||| || |||||||| || ||| Sbjct 11935 AAAATTCAGGACAAAGAGGGTATTCCTCCGGACCAGCAAAGGCTGATCTTTGCTGGTAAA 11876 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | |||||| || || ||||||| ||||| || ||||||||||| || |||||| Sbjct 11875 CAACTTGAAGATGGCAGGACATTGGCCGACTACAACATCCAAAAGGAATCGACCCTTCAC 11816 Query 25239 ATGGTGTTACG 25249 | || |||| Sbjct 11815 CTTGTCCTACG 11805 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| | || ||||| || || ||| ||| |||| | | Sbjct 12931 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 12872 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || || | || | || |||||| || || ||||| | || || || Sbjct 12871 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 12812 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| ||||| || |||||||| | ||| |||||||||| || Sbjct 12811 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 12752 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| ||||| || || || ||| ||||| Sbjct 12751 ATTCAGAAGGAGTCCACCCTCCACTTGGTG 12722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409424990429414