Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq189138 129 9e-25 seq64485 125 1e-23 seq64482 116 6e-21 seq107102 113 7e-20 seq117103 104 4e-17 seq112091 104 4e-17 seq115376 98.7 1e-15 seq100951 84.2 3e-11 >seq189138 Length=1569 Score = 129 bits (142), Expect = 9e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| || || || ||||| || ||| | || |||| ||| Sbjct 264 AATGCAAATCTTTGTCAAGACTCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 323 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| || ||| | ||| ||||||||| || || ||||| || || || |||| Sbjct 324 -TGATACCATCGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATC 382 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||||||||| || || || |||| ||| || | || | | |||||||| Sbjct 383 AGCAGAGGCTTATTTTTGCTGGGAAGCAGCTAGAAGATGGTAGGACTCTGGCAGATTATA 442 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754 | || || |||||||| ||| | || |||||| | ||| Sbjct 443 ACATCCAGAAAGAATCGACTCTTCACTTGGTTCTGCGT 480 >seq64485 Length=1617 Score = 125 bits (138), Expect = 1e-23 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| || || || || || || ||| | || | || ||| Sbjct 27 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTC 86 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| || ||| | ||| ||||||||| || || ||||| || || || |||| Sbjct 87 -TGATACCATCGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 145 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||||||||| || ||||| |||||||| || | || | | |||||||| Sbjct 146 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATA 205 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754 | || || ||||| || ||| | || |||||| | ||| Sbjct 206 ACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGT 243 >seq64482 Length=1502 Score = 116 bits (128), Expect = 6e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| || || || || || || ||| | || | || ||| Sbjct 57 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTC 116 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || || ||| | ||| |||||||| || || ||||| || || || |||| Sbjct 117 -TGACACCATCGACAATGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCAGATC 175 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||||||||| || ||||| |||||||| || | || | | |||||||| Sbjct 176 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATA 235 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754 | || || ||||| || ||| | || |||||| | ||| Sbjct 236 ACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGT 273 >seq107102 Length=7485 Score = 113 bits (124), Expect = 7e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| ||||| || || || || ||| | || |||| ||| Sbjct 4412 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 4353 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| | ||| |||||||| || || ||||| || || || |||| Sbjct 4352 C-GACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATC 4294 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||||||||| ||||| || |||||| | |||||| || | || || | ||||| | Sbjct 4293 AGCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACA 4234 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | || || || || || ||| | || ||||| Sbjct 4233 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 4203 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || || || || || ||| | ||| | ||| Sbjct 3956 AATGCAGATTTTTGTCAAGACTCTGACCGGTAAGACCATCACTCTGGAGGTGGAAAGTTC 3897 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | || ||| || || ||||| || || || || || || || Sbjct 3896 AGACACCATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCGGACCA 3837 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| |||||||| || || ||| | || ||| | | ||| | | |||||||| Sbjct 3836 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGATGGGAGGACACTGGCCGATTATAA 3777 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||| ||||| || ||| |||| || || | ||| | || || || Sbjct 3776 TATTCAGAAAGAGTCGACTCTGCACTTAGTCCTTCGTCTGCGCGGCGG 3729 >seq117103 Length=17306 Score = 104 bits (114), Expect = 4e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| ||| | || || || || || | | |||| ||| Sbjct 8714 AATGCAAATCTTTGTGAAGACCCTAGCTGGGAAGACGATCACGTTGAAAGTTGAGAGCTC 8655 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || || ||| | ||| |||||||| || || ||||| || || || |||| Sbjct 8654 C-GACACCATCGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATC 8596 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||||||||||| ||||| || |||||| | |||||| || | || || | |||||||| Sbjct 8595 AGCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCAGATTATA 8536 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | || || || || || ||| | || ||||| Sbjct 8535 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 8505 >seq112091 Length=14418 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || || || || || || |||| |||| ||| Sbjct 12475 ATGCAAATCTTTGTGAAGACCCTCACTGGGAAGACAATTACCCTAGAAGTTGAGAGCTC- 12417 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || ||||| || || ||||| ||||| || || Sbjct 12416 TGACACCATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAGGGTATTCCACCGGACCA 12357 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| |||||||||||||| || | || || | | || | | ||| ||||| Sbjct 12356 GCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAAGACGGGAGGACGCTTGCAGACTATAA 12297 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | || ||||| | ||||| || ||||| || Sbjct 12296 CATCCAGAAAGAATCCACTCTCCACTTGGTGCTCCGTTTGCGGGGTGGAAT 12246 >seq115376 Length=10371 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| || || || || || || || |||| |||| ||| Sbjct 7211 ATGCAAATCTTTGTGAAGACCCTCACTGGGAAGACAATTACCCTAGAAGTTGAGAGCTC- 7269 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || || ||||| || || || || ||||| || || Sbjct 7270 TGACACCATTGACAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCACCGGACCA 7329 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| |||||||||||||| || | || || | | || | | ||| ||||| Sbjct 7330 GCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAAGACGGGAGGACGCTTGCAGACTATAA 7389 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | || ||||| | ||||| || ||||| || Sbjct 7390 CATCCAGAAAGAATCCACTCTCCACTTGGTGCTCCGTTTGCGGGGTGGAAT 7440 >seq100951 Length=7960 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 205736 TAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTAT 205795 ||||||||||||| ||||| ||||||||||||||||| || || |||||||||| || || Sbjct 6477 TAGCACCAAAATGCCGCCACTGAAAACCATAAACTGGTCCCAAGTCACCTTCTTCTCGAT 6418 Query 205796 CATTAAAACCACGT 205809 | || | |||| || Sbjct 6417 CTTTCAGACCAAGT 6404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752868553756800