Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq115376 86.0 5e-12 seq112091 86.0 5e-12 seq117103 82.4 6e-11 >seq115376 Length=10371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | |||||| || ||||| ||||| |||||||||||||| Sbjct 7894 TCCACCACGGAGACGTAGGACAAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGC 7835 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCC 18212 || ||| | | |||||| | |||||| || ||| |||| || ||||| || ||| Sbjct 7834 CAATGTCCTGCCATCTTCAAGTTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCC 7780 >seq112091 Length=14418 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || || | |||||| || ||||| ||||| |||||||||||||| Sbjct 11792 TCCACCACGGAGACGTAGGACAAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGC 11851 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCC 18212 || ||| | | |||||| | |||||| || ||| |||| || ||||| || ||| Sbjct 11852 CAATGTCCTGCCATCTTCAAGTTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCC 11906 >seq117103 Length=17306 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | || |||| |||||| || ||||| ||||||||||||||||| || Sbjct 8714 TCCTCCCCTCAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCTGC 8773 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | ||| || | ||| |||||||| | || | || || ||||| | ||| Sbjct 8774 AAGCGTCCTGCCATCCTCAAGTTGCTTGCCCGCGAAAATCAACCTCTGCTGATCTAGGGG 8833 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 8834 AATTCCTTCCTTGTC 8848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378077223506745