Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq64485 93.3 3e-14 seq64482 89.7 4e-13 >seq64485 Length=1617 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || | ||||| ||| ||||||||| | |||||||||| | Sbjct 482 CCACCACGCAGACGGAGGACAAGATGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCC 423 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || || | ||| || || || |||||||| ||||| || || | || Sbjct 422 AGAGTCCTACCATCCTCGAGTTGCTTCCCTGCGAAAATCAACCGCTGCTGGTCTGGGGGA 363 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| ||| | ||||||| | ||| ||||| | ||| || Sbjct 362 ATTCCTTCCTTGTC-CTGTATCTTCGCTTTGACGTTATCAATCGTGTCAGAACTCTCCAC 304 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || || ||||||||||| ||||| Sbjct 303 TTCCAAGGTGATAGTCTTGCCGGTAAGGGTCTTCACAAAAATCTGCAT 256 >seq64482 Length=1502 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | || | ||||| ||| ||||||||| | |||||||||| Sbjct 512 CCACCACGCAGACGGAGGACAAGATGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCT 453 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || || | ||| || || || |||||||| ||||| || || | || Sbjct 452 AGAGTCCTGCCATCCTCGAGTTGCTTCCCTGCGAAAATCAACCGCTGCTGGTCTGGGGGA 393 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| ||| | ||||||| | ||| ||||| | ||| || Sbjct 392 ATTCCTTCCTTGTC-CTGTATCTTCGCTTTGACGTTATCAATCGTGTCAGAACTCTCCAC 334 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || || ||||||||||| ||||| Sbjct 333 TTCCAAGGTGATAGTCTTGCCGGTAAGGGTCTTCACAAAAATCTGCAT 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380096059244058