Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq115376 116 4e-21 seq112091 116 4e-21 seq107102 96.9 4e-15 seq167565 91.5 1e-13 seq88322 91.5 1e-13 seq88321 91.5 1e-13 seq107869 89.7 5e-13 seq103813 87.8 2e-12 seq189138 84.2 2e-11 >seq115376 Length=10371 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||| ||||| |||||||| ||| || ||| || ||||| |||||| Sbjct 7869 TGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGCCAATGTCCTGCCATCTTCAAGTTGT 7810 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| ||||||| | |||||| || ||||| || || |||||||| |||||| Sbjct 7809 TTACCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGAATTTTA 7750 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || || || || | | ||| || |||| ||| | |||||| || || Sbjct 7749 GCCTTCACATTGTCGACAGTATCAGAGCTTTCGACCTCAAGAGTAATCGTCTTCCCAGTA 7690 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || ||||| || |||||| Sbjct 7689 AGAGTCTTCACGAAAATCTGCATA 7666 >seq112091 Length=14418 Score = 116 bits (128), Expect = 4e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||| ||||| |||||||| ||| || ||| || ||||| |||||| Sbjct 11817 TGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGCCAATGTCCTGCCATCTTCAAGTTGT 11876 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||||||| ||||||| | |||||| || ||||| || || |||||||| |||||| Sbjct 11877 TTACCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGAATTTTA 11936 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || || || || | | ||| || |||| ||| | |||||| || || Sbjct 11937 GCCTTCACATTGTCGACAGTATCAGAGCTTTCGACCTCAAGAGTAATCGTCTTCCCAGTA 11996 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || ||||| || |||||| Sbjct 11997 AGAGTCTTCACGAAAATCTGCATA 12020 >seq107102 Length=7485 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| | | |||| || || |||| || || || || || ||||||||||| Sbjct 4184 GCCTCCCCTCAGTCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGC 4243 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || || || |||||||| |||||| |||| || | ||||||||| || || Sbjct 4244 CAAAGTCCTACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGGGG 4303 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| |||||| ||| | | || | ||||| | | || || Sbjct 4304 AATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAAC 4363 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | |||||| || || | || || || || |||||||| Sbjct 4364 TTCCAAAGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGCAT 4411 >seq167565 Length=877 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | | || || | ||| | || || || || ||||||||||||||| Sbjct 506 GCCTCCACGGAGCCTCAGCACGAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGC 565 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||| ||||| || || || || |||||||||| ||||| |||||||| Sbjct 566 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGG 625 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | ||||| | | || || Sbjct 626 GATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCAC 685 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 686 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 733 >seq88322 Length=1192 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | | || || | ||| | || || || || ||||||||||||||| Sbjct 79 GCCTCCACGGAGCCTCAGCACGAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGC 138 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||| ||||| || || || || |||||||||| ||||| |||||||| Sbjct 139 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGG 198 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | ||||| | | || || Sbjct 199 GATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCAC 258 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 259 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 306 >seq88321 Length=3664 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | | || || | ||| | || || || || ||||||||||||||| Sbjct 2930 GCCTCCACGGAGCCTCAGCACGAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGC 2989 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| ||| ||||| || || || || |||||||||| ||||| |||||||| Sbjct 2990 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGG 3049 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | ||||| | | || || Sbjct 3050 GATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCAC 3109 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 3110 CTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3157 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | || |||| || | ||| | || || || || || |||||||||||| Sbjct 2475 CCTCCCCTCAACCGCAGCACAAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGCG 2534 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||||||| || || ||||| |||||||||| ||||| || || || Sbjct 2535 AGGGTGCGACCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 2594 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||| || | | || | ||||| | | ||| || Sbjct 2595 ATACCTTCCTTGTCTTGGATTTTGGCCTTGACGTTGTCTATTGTGTCGGAGCTTTCCACC 2654 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | ||||| ||||||| || || ||||| || |||||| Sbjct 2655 TCGAGCGTGATGGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCATA 2702 >seq107869 Length=8698 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | || |||| || | ||| | || || || || || |||||||||||| Sbjct 7705 CCTCCCCTCAACCGCAGCACAAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGCG 7764 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||||||| || || ||||| |||||||||| ||||| || || || Sbjct 7765 AGGGTGCGACCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 7824 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| || || || | | || | ||||| | | || || Sbjct 7825 ATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCACC 7884 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||||||||| || || ||||| || ||||| Sbjct 7885 TCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 7931 >seq103813 Length=13362 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || |||||||| ||| || ||||| ||||||||| || || || Sbjct 12369 GTCGACTCTTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCGTCTTCGAGCTGCTTCCCG 12428 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| || | ||||| |||||||| |||||||| ||||| || || || Sbjct 12429 GCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGTATCTTGGCCTTG 12488 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || || || | || | ||||||||||||| || Sbjct 12489 ACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGCGTGATGGTCTTGCCGGTCAGGGTC 12548 Query 143168 TTTACGAATATTTGCATAGCT 143188 || |||||||| |||||| || Sbjct 12549 TTGACGAATATCTGCATACCT 12569 >seq189138 Length=1569 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | ||| || |||| || ||||| ||||| |||||||| || Sbjct 263 CCTCCTCTCAGACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCA 204 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||| |||||||| || |||||| |||||| || ||||| || || || Sbjct 203 AGCGTTCTGCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGGGG 144 Query 143078 ATGCCTTCTTTGTC 143091 || ||||||||||| Sbjct 143 ATCCCTTCTTTGTC 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505277869342320