Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq189138 116 3e-21 seq117102 98.7 7e-16 seq117103 93.3 3e-14 seq107102 89.7 4e-13 seq88321 87.8 1e-12 seq64482 87.8 1e-12 seq64485 84.2 2e-11 >seq189138 Length=1569 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | | ||| || ||||||||||| || ||||| |||||||| || Sbjct 263 CCTCCTCTCAGACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCA 204 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| |||| || | ||| |||||||| | ||||| || || ||||| || Sbjct 203 AGCGTTCTGCCGTCCTCGAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGGGG 144 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| ||| ||| | || |||||||| | | || || Sbjct 143 ATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCAGAACTCTCCACC 84 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||||||| || || || || || || ||||| || ||||| Sbjct 83 TCAAGAGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 37 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| ||||| || || ||||| |||||||| || || | | | || || | ||| Sbjct 696 ATGGAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCCAGTGTCCGGCCATCCTCGAGTTG 637 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || || ||| | |||||||| |||||||| ||||||||||| ||||| || || Sbjct 636 CTTCCCTGCGAAAATCAAACGCTGTTGGTCTGGCGGAATTCCTTCCTTGTCCTGTATCTT 577 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 |||| || ||| | || || || || | || || || ||||| || || || || | Sbjct 576 TGCT-TTGACATTATCGATCGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTCTTGCCAG 518 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||||||||| ||||| Sbjct 517 TAAGGGTCTTTACAAAAATCTGCAT 493 >seq117102 Length=5212 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | | | || || || || || || || || || |||||||| || Sbjct 310 TGCCACCTCTGAGACGAAGCACCAAGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCG 369 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| ||| | || || | ||||||||| ||| | ||||| | || || || | Sbjct 370 CCAGAGTTCGGCCATCCTCAAGTTGTTTGCCCGCGAAAATCAACCTCTGCTGATCTGGGG 429 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||||||| ||||| ||||| ||||||| | || ||||| || | |||| | Sbjct 430 GAATTCCTTCCTTGTCCTGGATTTTCGCCTTTACATTATCGATGGTGTCCGAACTTTCAA 489 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||| |||||| || || || || || || || ||||| || ||||| Sbjct 490 CCTCTAGGGTAATAGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 538 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || ||||| |||||||| || ||| | || | || || Sbjct 102 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCTGCGAGAGTCCTGCCATCCTCA 161 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| ||| | ||||| | || ||||| || ||||| || ||||| Sbjct 162 AGTTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 221 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || | || || || || | |||| || || | ||| ||||| || Sbjct 222 ATTTTCGCCTTCACGTTATCGATAGTGTCCGAACTTTCAACCTCAAGGGTTATGGTCTTG 281 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 282 CCAGTGAGGGTCTTCACAAAGATTTGCAT 310 >seq117103 Length=17306 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || ||||| |||||||| || || | || | || || Sbjct 8733 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCTGCAAGCGTCCTGCCATCCTCA 8792 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| ||| | ||||| | || || || ||||||||||| ||||| Sbjct 8793 AGTTGCTTGCCCGCGAAAATCAACCTCTGCTGATCTAGGGGAATTCCTTCCTTGTCCTGG 8852 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| |||||| | || ||||| || | |||| || || | |||||| || || Sbjct 8853 ATTTTTGCCTTTACGTTATCGATGGTGTCTGAACTTTCAACCTCGAGGGTAATAGTCTTG 8912 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| || ||||| Sbjct 8913 CCAGTGAGGGTCTTCACAAATATCTGCAT 8941 >seq107102 Length=7485 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || ||||| |||||||| || ||| | || | || || Sbjct 4431 ACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCTGCGAGAGTCCTGCCATCCTCA 4490 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| ||| | ||||| | || ||||| || ||||| || ||||| Sbjct 4491 AGTTGCTTGCCGGCGAAAATCAACCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 4550 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| || | || || || || | |||| || || | ||| ||||| || Sbjct 4551 ATTTTCGCCTTCACGTTATCGATAGTGTCCGAACTTTCAACCTCAAGGGTTATGGTCTTG 4610 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 4611 CCAGTGAGGGTCTTCACAAAGATTTGCAT 4639 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | | | || || || || || || || || | |||||||| || Sbjct 4639 TGCCACCTCTGAGACGAAGCACCAAGTGGAGTGTTGATTCCTTCTAGATGTTGTAGTCCG 4698 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| ||| | || || | ||| ||||| ||| | ||||| | || || || | Sbjct 4699 CCAGAGTTCGGCCATCCTCAAGTTGCTTGCCCGCGAAAATCAACCTCTGCTGATCTGGGG 4758 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||||||| ||||| ||||| ||||||| | || ||||| || | |||| | Sbjct 4759 GAATTCCTTCCTTGTCCTGGATTTTCGCCTTTACATTATCGATGGTGTCCGAACTTTCAA 4818 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||| |||||| || || || || || || || ||||| || ||||| Sbjct 4819 CCTCTAGGGTAATAGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 4867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| || |||| || | || || ||||| ||||| || || || ||||||||||| Sbjct 4183 TGCCTCCCCTCAGTCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCG 4242 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | || | || || | |||||| ||||| | || | | ||| || || | Sbjct 4243 CCAAAGTCCTACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGGG 4302 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| ||||||| || ||| | || ||||| ||| | || | Sbjct 4303 GAATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAA 4362 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || || || || || || || || || ||||| |||||||| Sbjct 4363 CTTCCAAAGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGCAT 4411 >seq88321 Length=3664 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | || | ||| || || || || || || |||||||||||| Sbjct 2475 CCTCCCCTCAACCGCAGCACAAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGCG 2534 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | || || |||||| | |||| ||| || ||||| || Sbjct 2535 AGGGTGCGACCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGGG 2594 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| |||||| ||| || | ||||| || ||| |||| || Sbjct 2595 ATACCTTCCTTGTCTTGGATTTTGGCCTTGACGTTGTCTATTGTGTCGGAGCTTTCCACC 2654 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || ||||| || || |||||||| || || || || |||||| Sbjct 2655 TCGAGCGTGATGGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCATA 2702 >seq64482 Length=1502 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || || ||||| |||||||||||| |||| | || | || || | ||| Sbjct 489 ATGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCTAGAGTCCTGCCATCCTCGAGTTG 430 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || || ||| | ||||| || || ||||| ||||||||||| ||||| || || Sbjct 429 CTTCCCTGCGAAAATCAACCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGTATCTT 370 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || || | || || || || | | || || || ||||| || || || || | Sbjct 369 CGCT-TTGACGTTATCAATCGTGTCAGAACTCTCCACTTCCAAGGTGATAGTCTTGCCGG 311 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || |||||||| ||||| Sbjct 310 TAAGGGTCTTCACAAAAATCTGCAT 286 >seq64485 Length=1617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || || ||||| |||||||||||| ||| | || | || || | ||| Sbjct 459 ATGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCCAGAGTCCTACCATCCTCGAGTTG 400 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || || ||| | ||||| || || ||||| ||||||||||| ||||| || || Sbjct 399 CTTCCCTGCGAAAATCAACCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGTATCTT 340 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || || | || || || || | | || || || ||||| || || || || | Sbjct 339 CGCT-TTGACGTTATCAATCGTGTCAGAACTCTCCACTTCCAAGGTGATAGTCTTGCCGG 281 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || |||||||| ||||| Sbjct 280 TAAGGGTCTTCACAAAAATCTGCAT 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360969743419941