Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq64485 104 2e-17 seq117103 93.3 3e-14 seq115376 93.3 3e-14 seq112091 93.3 3e-14 seq107102 93.3 3e-14 seq189138 91.5 1e-13 seq64482 91.5 1e-13 seq44578 86.0 5e-12 >seq64485 Length=1617 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||| || || || || ||||| |||| || | | ||||| Sbjct 236 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCCTCT 177 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| ||||||| |||||||||||| ||| | ||| || ||||| | Sbjct 176 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 117 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 |||||| ||| || | | ||| ||||| |||| ||| | || || || || Sbjct 116 ATTTTCGCTTTGACATTGTCGATGGTATCAGAGCTCTCCACTTCCAAAGTGATTGTCTTT 57 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || |||||||| ||||||||| Sbjct 56 CCAGTAAGGGTCTTGACAAAGATTTGCATT 27 >seq117103 Length=17306 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||||||||| ||||||||||||| ||| | | |||||||| || || || Sbjct 8289 GTTGACTCCTTTTGAATGTTGTAATCCGCCAGTGTCCGGCCATCCTCCAGTTGCTTCCCG 8348 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || |||| | ||||||||||| ||| | ||| || ||||| || || ||| Sbjct 8349 GCGAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGTATCTTAGCTTTG 8408 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTC-CG-TTTCGACGGTAATGGTTTTACCTGTTAAAG 19022 || | | | |||| ||| |||| || ||| | |||||||| || || || | | Sbjct 8409 ACATTATCAATGGTAT--CCAAGCTCTCGACTTCCAAAGTAATGGTCTTCCCAGTAAGGG 8466 Query 19023 TTTTGACAAAAATTTGCAT 19041 | ||||||||||| ||||| Sbjct 8467 TCTTGACAAAAATCTGCAT 8485 >seq115376 Length=10371 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| ||||| ||||| | || | | ||||| Sbjct 8104 CACCAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTCCTCCCATCCTC 8045 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| || |||| |||||||| || ||| || | ||||| ||||| Sbjct 8044 CAGCTGCTTACCGGCGAAAATCAGTCTCTGTTGGTCCGGTGGGATCCCCTCCTTGTCTTG 7985 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||||| || | ||| || | ||| |||||||| Sbjct 7984 GATCTTTGCCTTAACATTATCAACAGTGTCTGAACTCTCAACCTCCAAGGTGATGGTTTT 7925 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| | || ||||| ||||| |||||| Sbjct 7924 TCCTGTCAGGGTCTTGACGAAAATCTGCATT 7894 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| ||||| || ||||| |||| ||| | | || || Sbjct 7192 CACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCAGCCAAGGTTCGGCCATCTTC 7133 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | ||||| |||||||| || || | ||| || ||||| Sbjct 7132 CAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTG 7073 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| ||| || | | | || ||| ||| |||| ||| || || || Sbjct 7072 GATTTTTGCTTTCACATTATCAATTGTGTCGGAGCTTTCCACCTCGAGGGTGATTGTCTT 7013 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || |||||||||||||| Sbjct 7012 GCCAGTAAGAGTCTTCACAAAAATTTGCAT 6983 >seq112091 Length=14418 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| ||||| ||||| | || | | ||||| Sbjct 11582 CACCAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTCCTCCCATCCTC 11641 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| || |||| |||||||| || ||| || | ||||| ||||| Sbjct 11642 CAGCTGCTTACCGGCGAAAATCAGTCTCTGTTGGTCCGGTGGGATCCCCTCCTTGTCTTG 11701 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||||| || | ||| || | ||| |||||||| Sbjct 11702 GATCTTTGCCTTAACATTATCAACAGTGTCTGAACTCTCAACCTCCAAGGTGATGGTTTT 11761 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| | || ||||| ||||| |||||| Sbjct 11762 TCCTGTCAGGGTCTTGACGAAAATCTGCATT 11792 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| ||||| || ||||| |||| ||| | | || || Sbjct 12494 CACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCAGCCAAGGTTCGGCCATCTTC 12553 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | ||||| |||||||| || || | ||| || ||||| Sbjct 12554 CAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTG 12613 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| ||| || | | | || ||| ||| |||| ||| || || || Sbjct 12614 GATTTTTGCTTTCACATTATCAATTGTGTCGGAGCTTTCCACCTCGAGGGTGATTGTCTT 12673 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || |||||||||||||| Sbjct 12674 GCCAGTAAGAGTCTTCACAAAAATTTGCAT 12703 >seq107102 Length=7485 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||||||||||| || | | ||||| Sbjct 4202 CACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCCTC 4261 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||||| || ||| | ||||| || |||||||| ||| | ||| || ||||| Sbjct 4262 AAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGGGGAATGCCTTCCTTGTCCTG 4321 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| ||| || | | | | || ||| ||| ||| | || || || || Sbjct 4322 AATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCAACTTCCAAAGTGATCGTCTT 4381 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||| || |||||||| ||||||||| Sbjct 4382 CCCAGTTAGGGTCTTGACAAAGATTTGCATT 4412 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || ||||| || |||||||| ||||| |||| ||| | | || ||||| || Sbjct 3752 GTGCAGAGTCGACTCTTTCTGAATATTATAATCGGCCAGTGTCCTCCCATCTTCCAGTTG 3811 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| |||| || |||||||| ||| || | |||||| || || || || Sbjct 3812 CTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTT 3871 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 | || || | | ||| || || | ||| || | || ||||| ||||| || Sbjct 3872 CGCCTTCACATTGTCGATGGTGTCTGAACTTTCCACCTCCAGAGTGATGGTCTTACCGGT 3931 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 | ||| ||||||||||| |||||| Sbjct 3932 CAGAGTCTTGACAAAAATCTGCATT 3956 >seq189138 Length=1569 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || || || || || || ||||| |||| || | | || || Sbjct 473 ACCAAGTGAAGAGTCGATTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCTTCT 414 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| ||||||| ||||||||||| ||| | ||| || ||||| | Sbjct 413 AGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGA 354 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 |||||| ||| || | | ||| ||||| ||| ||| | || || ||||| Sbjct 353 ATTTTCGCTTTGACATTGTCGATGGTATCAGAGCTCTCAACTTCCAAAGTGATTGTTTTC 294 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | ||| |||||||| ||||||||| Sbjct 293 CCAGTAAGAGTCTTGACAAAGATTTGCATT 264 >seq64482 Length=1502 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || ||||| || || || || ||||| |||| || | | ||||| Sbjct 266 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCCTCT 207 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| ||||||| ||||||||||| ||| | ||| || ||||| | Sbjct 206 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGA 147 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||| || | | ||| || || |||| ||| | || || || || Sbjct 146 ATTTTTGCTTTGACATTGTCGATGGTGTCAGAGCTCTCCACTTCCAAAGTGATTGTCTTT 87 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || |||||||| ||||||||| Sbjct 86 CCAGTAAGGGTCTTGACAAAGATTTGCATT 57 >seq44578 Length=5095 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || |||||||| || || ||||||||||||| ||| | ||||||| Sbjct 1068 CACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAGGGTTCGGCCGTCCTC 1127 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || |||||||| ||| ||| | |||||| ||||| Sbjct 1128 CAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 1187 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | ||| || ||| |||| || | ||| ||||| || Sbjct 1188 GATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTCTT 1247 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 1248 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 1277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413188380903394