Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq189138 98.7 8e-16 seq64485 95.1 1e-14 seq64482 95.1 1e-14 seq107102 93.3 4e-14 seq117103 86.0 5e-12 seq115376 82.4 6e-11 seq112091 82.4 6e-11 >seq189138 Length=1569 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || |||||||| || ||||| ||||| ||| ||| || |||||| Sbjct 473 ACCAAGTGAAGAGTCGATTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCTTCT 414 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | || || || ||| ||||||||||||| ||||| ||| | |||||| ||||| | Sbjct 413 AGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGA 354 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 ||||| ||| || | | | | | ||| || | || ||||| || || ||||| Sbjct 353 ATTTTCGCTTTGACATTGTCGATGGTATC-AGAGCTCTCAACTTCCAAAGTGATTGTTTT 295 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | || |||||||| ||||||||| Sbjct 294 CCCAGTAAGAGTCTTGACAAAGATTTGCATT 264 >seq64485 Length=1617 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || || ||||| || ||||| ||||| ||| ||| || ||| || Sbjct 236 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCCTCT 177 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||| || ||| ||||||||||||| ||||| ||| | |||||| ||||| | Sbjct 176 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGA 117 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 ||||| ||| || | | | | | ||| || | ||| ||||| || || || || Sbjct 116 ATTTTCGCTTTGACATTGTCGATGGTATC-AGAGCTCTCCACTTCCAAAGTGATTGTCTT 58 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | || |||||||| ||||||||| Sbjct 57 TCCAGTAAGGGTCTTGACAAAGATTTGCATT 27 >seq64482 Length=1502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || || ||||| || ||||| ||||| ||| ||| || ||| || Sbjct 266 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCCTCT 207 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||||| || ||| ||||||||||||| ||||| ||| | |||||| ||||| | Sbjct 206 AGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGA 147 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 |||||| ||| || | | | | | || || | ||| ||||| || || || || Sbjct 146 ATTTTTGCTTTGACATTGTCGATGGTGTC-AGAGCTCTCCACTTCCAAAGTGATTGTCTT 88 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | || |||||||| ||||||||| Sbjct 87 TCCAGTAAGGGTCTTGACAAAGATTTGCATT 57 >seq107102 Length=7485 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || |||||| || || || || || || || ||||||||||| ||| ||| || ||| Sbjct 4199 CAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATC 4258 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 || | |||||| || ||| | |||||||| || ||||| ||| | |||||| ||||| Sbjct 4259 CTCAAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGGGGAATGCCTTCCTTGTC 4318 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGG 20174 |||||| ||| || | | ||| | ||| || | || ||||| || || | Sbjct 4319 CTGAATTTTGGCTTTGACATTGTCAATGGTGTCG-GAGCTCTCAACTTCCAAAGTGATCG 4377 Query 20175 TTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 | || || || | || |||||||| ||||||||| Sbjct 4378 TCTTCCCAGTTAGGGTCTTGACAAAGATTTGCATT 4412 >seq117103 Length=17306 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || || ||||| || ||||| ||||| ||| || | ||||||| Sbjct 8049 ACCAAGTGCAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGTGTCCTCCCATCTTCC 8108 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||| || || ||| |||| |||||||| || || || | ||| || ||||| Sbjct 8109 AGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGG 8168 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || ||| ||||| | | ||| | || | ||| |||| || |||||||| Sbjct 8169 ATCTTTGCCTTCACATTGTCAATGGTGTCTGAACTCTCCACCTCCAGAGTGATGGTTTTT 8228 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||||| || ||||||||||| |||||| Sbjct 8229 CCGGTCAGAGTCTTGACAAAAATCTGCATT 8258 >seq115376 Length=10371 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || || || || || || ||||| ||||| ||| ||| |||||| Sbjct 7192 CACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCAGCCAAGGTTCGGCCATCTTC 7133 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 || || ||||| ||| | ||||||||||| || || || | |||||| ||||| Sbjct 7132 CAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTG 7073 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 |||||| |||||| | ||| | ||| |||| || | ||| || || || Sbjct 7072 GATTTTTGCTTTCACATTATCAATTGTGTCGGAGCTTTCCACCTCGAGGGTGATTGTCTT 7013 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || | || || |||||||||||||| Sbjct 7012 GCCAGTAAGAGTCTTCACAAAAATTTGCAT 6983 >seq112091 Length=14418 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || || || || || || ||||| ||||| ||| ||| |||||| Sbjct 12494 CACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCAGCCAAGGTTCGGCCATCTTC 12553 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 || || ||||| ||| | ||||||||||| || || || | |||||| ||||| Sbjct 12554 CAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTG 12613 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 |||||| |||||| | ||| | ||| |||| || | ||| || || || Sbjct 12614 GATTTTTGCTTTCACATTATCAATTGTGTCGGAGCTTTCCACCTCGAGGGTGATTGTCTT 12673 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || | || || |||||||||||||| Sbjct 12674 GCCAGTAAGAGTCTTCACAAAAATTTGCAT 12703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418186035880281