Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq88321 100 2e-16 seq107869 98.7 8e-16 seq167565 96.9 3e-15 seq88322 93.3 4e-14 seq117103 89.7 4e-13 seq216809 86.0 5e-12 seq189138 86.0 5e-12 seq2978 84.2 2e-11 seq107102 82.4 6e-11 >seq88321 Length=3664 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||||| | ||| | ||| || || |||||| |||||||||||||| || Sbjct 2474 ACCTCCCCTCAACCGCAGCACAAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGC 2533 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || |||| || |||||||| || || | || | ||||||||| ||| ||| Sbjct 2534 GAGGGTGCGACCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGG 2593 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| ||||| ||||| |||| || |||| ||| Sbjct 2594 GATACCTTCCTTGTCTTGGATTTTGGCCTTGACGTTGTCTATTGTGTCGGAGCTTTCCAC 2653 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| ||||| || || || |||||||| Sbjct 2654 CTCGAGCGTGATGGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 2701 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| | ||| | ||| || || |||||| || ||||||||||| || Sbjct 2931 CCTCCACGGAGCCTCAGCACGAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGCG 2990 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||| |||||||| ||| || | || | ||||||||| || || Sbjct 2991 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGG 3050 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | |||||||||| || || ||||| | | || ||||| |||| |||| Sbjct 3051 ATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCCA 3108 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || ||||| || || ||||| || |||||||| Sbjct 3109 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 3157 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | ||| | || | || || || ||| || ||||||||||||||||| Sbjct 2702 ACCCCCGCGAAGCCTCAGGACGAGGTGGAGCGTTGACTCTTTCTGAATGTTGTAATCAGC 2761 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| |||||||| ||| || |||| | ||||||||| || || Sbjct 2762 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCGGGAGG 2821 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| ||||| ||||| |||| ||||| | ||| Sbjct 2822 GATACCTTCCTTGTCTTGGATTTTGGCCTTGACGTTGTCTATTGTATCAGAGCTTTCCAC 2881 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| || || || || || |||||||| Sbjct 2882 CTCGAGCGTGATGGTCTTCCCGGTCAGGGTCTTGACGAAGATCTGCAT 2929 >seq107869 Length=8698 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||||| | ||| | ||| || || |||||| |||||||||||||| || Sbjct 7704 ACCTCCCCTCAACCGCAGCACAAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGC 7763 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || |||| || |||||||| || || | || | ||||||||| ||| ||| Sbjct 7764 GAGGGTGCGACCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGG 7823 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | |||||||||| || || ||||| | | || ||||| |||| |||| Sbjct 7824 GATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCC 7881 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || ||||| || || ||||| || |||||||| Sbjct 7882 ACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 7931 >seq167565 Length=877 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| | ||||| | ||| | ||| || || |||||| |||||||||||||| || Sbjct 278 ACCTCCCCTCAACCGCAGCACAAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGC 337 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || |||| || |||||||| || || | || | ||||||||| ||| ||| Sbjct 338 GAGGGTGCGACCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGG 397 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || ||||||||| ||||| ||||| |||| ||||| | ||| Sbjct 398 GATACCTTCCTTGTCTTGGATTTTGGCCTTGACGTTGTCTATTGTATCAGAGCTTTCCAC 457 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| || || || || || |||||||| Sbjct 458 CTCGAGCGTGATGGTCTTCCCGGTCAGGGTCTTGACGAAGATCTGCAT 505 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| | ||| | ||| || || |||||| || ||||||||||| || Sbjct 507 CCTCCACGGAGCCTCAGCACGAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGCG 566 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||| |||||||| ||| || | || | ||||||||| || || Sbjct 567 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGG 626 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | |||||||||| || || ||||| | | || ||||| |||| |||| Sbjct 627 ATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCCA 684 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || ||||| || || ||||| || |||||||| Sbjct 685 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 733 >seq88322 Length=1192 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || | ||| | ||| | ||| || || |||||| || ||||||||||| || Sbjct 80 CCTCCACGGAGCCTCAGCACGAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGCG 139 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||| |||||||| ||| || | || | ||||||||| || || Sbjct 140 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGG 199 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | |||||||||| || || ||||| | | || ||||| |||| |||| Sbjct 200 ATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCCA 257 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || ||||| || || ||||| || |||||||| Sbjct 258 CCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 306 >seq117103 Length=17306 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || || ||||||||||||||||||||| |||| | || | ||||| Sbjct 8276 CACAAGATGTAGAGTTGACTCCTTTTGAATGTTGTAATCCGCCAGTGTCCGGCCATCCTC 8335 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||| ||||| ||| || |||| || | ||||||||| || | | |||||||||| Sbjct 8336 CAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTG 8395 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGTT 48694 || || |||| | | |||||||| | ||| || | || | || ||||| Sbjct 8396 TATCTTAGCTTTGACATTATCAATGGTATC--CAAGCTCTCGACTTCCAAAGTAATGGTC 8453 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || || |||||||||||||| Sbjct 8454 TTCCCAGTAAGGGTCTTGACAAAAATCTGCAT 8485 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC--GCTCGTCC 48574 ||| || ||||| ||| ||||||||||||||||| || | ||| ||| || | ||| Sbjct 8732 CACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCTG-CAAGCGTCCTGC-CATCC 8789 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || || ||||| || || |||| || | ||||||||| | || | | |||||||||| Sbjct 8790 TCAAGTTGCTTGCCCGCGAAAATCAACCTCTGCTGATCTAGGGGAATTCCTTCCTTGTCC 8849 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||||| ||| | | ||||| || | | || ||||| || || || Sbjct 8850 TGGATTTTTGCCTTTACGTTATCGATGGTGTCTGAACTTTCAACCTCGAGGGTAATAGTC 8909 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || |||||||| |||||||| Sbjct 8910 TTGCCAGTGAGGGTCTTCACAAATATCTGCAT 8941 >seq216809 Length=944 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || ||||||||||| |||| || |||||||||||||| Sbjct 464 TGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGCCAGGGTGCGGCCGTCCTCCAGCTGC 405 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || || | |||||| ||| || | | ||||||||| || || Sbjct 404 TTGCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 345 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| |||| |||| ||| | || ||||| || |||| Sbjct 344 GCCTTCACGTTGTCG--ATGGTGTCGGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCGG 287 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || || || |||||||| Sbjct 286 TGAGGGTCTTGACGAAGATCTGCAT 262 >seq189138 Length=1569 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||||||||||||||| ||||||| | || | ||||| || ||||| || || | Sbjct 684 CTCCTTTTGAATGTTGTAGTCAGCCAGTGTCCGGCCATCCTCGAGTTGCTTCCCTGCGAA 625 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| |||||||| || || ||| | | |||||||||| || || |||| | || Sbjct 624 AATCAAACGCTGTTGGTCTGGCGGAATTCCTTCCTTGTCCTGTATCTT-TGCT---TTGA 569 Query 48655 CGCTATGGTATCG-GT-AGA---CTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTT 48709 | ||| | |||| || ||| |||| ||| | || || || || || || || || Sbjct 568 CATTATCG-ATCGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTCTTGCCAGTAAGGGTC 510 Query 48710 TTCACAAAAATCTGCAT 48726 || |||||||||||||| Sbjct 509 TTTACAAAAATCTGCAT 493 >seq2978 Length=2151 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/241 (68%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 48487 AAGACAGTCAAAA-CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAA 48545 |||| | | |||| || ||||||| | | ||||| || || || ||| || |||| Sbjct 272 AAGAGACTTAAAAGCCGCCGCGCAGACGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAA 213 Query 48546 TGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCT 48605 |||| ||||| |||| | | | | || ||||| ||||| ||| | |||| | | || Sbjct 212 TGTTATAATCGGCCAGTGTCCTCCCATCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCT 153 Query 48606 GCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTAT 48665 |||| ||| || | | ||||| ||| || ||| ||| | | | ||||| | Sbjct 152 GCTGGTCCGGAGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCAATGGTGT 93 Query 48666 CGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCA 48725 | | | ||| ||| | || ||||| |||||||| ||||| || ||||||||||||| Sbjct 92 CTGAACTTTCCACCTCCAGAGTGATGGTCTTACCGGTCAGAGTCTTGACAAAAATCTGCA 33 Query 48726 T 48726 | Sbjct 32 T 32 >seq107102 Length=7485 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || || |||||| |||||||||||||| |||| | || | ||||| Sbjct 3974 CACAAGATGTAGAGTTGACTCCTTCTGAATGTTGTAATCCGCCAGTGTCCGGCCATCCTC 4033 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||| ||| || |||| || | ||||||||| || | | ||| |||||| Sbjct 4034 AAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTG 4093 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || |||| | | |||||||| | ||| || | |||||||| || Sbjct 4094 TATCTTAGCTTTGACATTATCAATGGTATCCGAGCTCTCAACTTCCAAAGTTATGGTCTT 4153 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||||||||| Sbjct 4154 CCCAGTAAGGGTCTTGACAAAAATCTGCAT 4183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419844479140001