Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq140807 113 2e-20 seq108103 109 3e-19 seq124485 105 3e-18 seq112148 105 3e-18 seq103412 105 3e-18 seq34561 105 3e-18 seq210200 104 1e-17 seq107660 104 1e-17 seq63779 102 4e-17 seq126043 100 1e-16 seq126042 100 1e-16 seq57140 100 1e-16 seq55995 100 1e-16 seq76274 96.9 2e-15 seq124510 93.3 2e-14 seq99430 89.7 3e-13 >seq140807 Length=1025 Score = 113 bits (124), Expect = 2e-20 Identities = 82/95 (86%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||||| | ||| || | ||||||||||| | | |||||||| ||||||||||||||| Sbjct 76 AGAATTGAAAAACAA--ATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 133 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||||||||||| |||| Sbjct 134 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 168 >seq108103 Length=6329 Score = 109 bits (120), Expect = 3e-19 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| || ||||| | | ||||||||| | | |||||||| ||||||||||||||||| Sbjct 690 AATAAAAGAAAAAGAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 749 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||| ||||||||||||||| ||||| Sbjct 750 GCACGACGCTCTAACCAACTGAGCTAATAGGCCG 783 >seq124485 Length=7239 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 1870 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 1929 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 1930 CTGAGCTAATAGGCC 1944 >seq112148 Length=15738 Score = 105 bits (116), Expect = 3e-18 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 244 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 185 Query 11516 TGAGCTAATGGGCCGTCGACGA 11537 ||||||||| |||| | ||||| Sbjct 184 TGAGCTAATAGGCC-TTGACGA 164 >seq103412 Length=24076 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11446 AAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| |||| |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 22746 AAAAACAAAAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 22805 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 22806 GCTCTAACCAGCTGAGCTAATAGGCC 22831 >seq34561 Length=1315 Score = 105 bits (116), Expect = 3e-18 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 796 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 737 Query 11516 TGAGCTAATGGGCCGTCGACGA 11537 ||||||||| |||| | ||||| Sbjct 736 TGAGCTAATAGGCC-TTGACGA 716 >seq210200 Length=840 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 213 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 154 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 153 TGAGCTAATAGGCC 140 >seq107660 Length=10064 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2630 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2689 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2690 TGAGCTAATAGGCC 2703 >seq63779 Length=2256 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||| | | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 402 AAAGTGGCCCAGGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 343 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 342 CAACTGAGCTAATAGGCC 325 >seq126043 Length=14361 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1741 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1800 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1801 TGAGCTAATAGGCC 1814 >seq126042 Length=13189 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 11208 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 11267 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 11268 TGAGCTAATAGGCC 11281 >seq57140 Length=5352 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 60 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 61 TGAGCTAATAGGCC 74 >seq55995 Length=16560 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 11286 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 11345 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 11346 TGAGCTAATAGGCC 11359 >seq76274 Length=8617 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| | ||||| ||||||||||||||||||||| ||||| Sbjct 5890 TTGGCCCATGCAGGTCTCGAACCTGCAACCTTTGCGTTATTAGCACGACGCTCTAACCAA 5949 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 5950 CTGAGCTAATAGGCC 5964 >seq124510 Length=7077 Score = 93.3 bits (102), Expect = 2e-14 Identities = 79/96 (82%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||| || | ||||| | ||||| ||| | | ||||||| |||||||||||||| Sbjct 592 TAGAACTACTCAAAAAAGGA--TGGCCTATGCAGGTCTCGAACC--CGACCTTCGCGTTA 537 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 536 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 501 >seq99430 Length=5817 Score = 89.7 bits (98), Expect = 3e-13 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 11459 CCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGA 11518 |||||| | | |||||| | ||||||||||||||| ||||||||||||| ||||||||| Sbjct 4950 CCCATGCAGGTCTCGAACTTGCGACCTTCGCGTTATCAGCACGACGCTCTAACCAACTGA 5009 Query 11519 GCTAATGGGCC 11529 |||||| |||| Sbjct 5010 GCTAATAGGCC 5020 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260617979637076