Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq102887 132 8e-27 seq120582 122 1e-23 seq57586 120 5e-23 seq138515 114 2e-21 seq124056 114 2e-21 seq38807 109 9e-20 seq64776 102 1e-17 >seq102887 Length=31110 Score = 132 bits (146), Expect = 8e-27 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || || || || |||||||| || ||||||||||| || || Sbjct 4005 GCGAAGCGCCATCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 4063 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || ||||| || || ||||| || || || |||| || |||| Sbjct 4064 CCGCCGCCTCGCCCGCCGTGGCGGCGTGAAGCGCATCAGCGGCCTGATCTACGAGGAGAC 4123 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 4124 CCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 4183 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| || ||||| |||||| ||||||| ||||||| || Sbjct 4184 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGC 4228 >seq120582 Length=16558 Score = 122 bits (134), Expect = 1e-23 Identities = 175/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| |||||||||||||| || ||||| || ||||| || || || Sbjct 13765 CTCCGCGACAACATCCAGGGAATCACCAAGCCGGCCATCCGCCGCCTGGCCCGCCGCGGC 13824 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| | || | |||| || |||| || | || | ||||||||| Sbjct 13825 GGCGTCAAGCGCATAAGCGGCCTCATCTACGAGGAGACGCGAGGCGTCCTCAAGATCTTC 13884 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || || || |||||||| || ||||| ||| Sbjct 13885 CTCGAGAACGTCATCCGCGACGCCGTCACGTACACTGAGCACGCCCGCCGCAAGACCGTC 13944 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| ||||||| || | || | || ||| | | | |||||||| || Sbjct 13945 ACCGCCATGGACGTCGTCTACGCCCTCAAGAGGCAGGGCAGGACTCTCTATGGTTTCGGC 14004 Query 16694 AGTTAAT 16700 |||||| Sbjct 14005 GGTTAAT 14011 >seq57586 Length=14543 Score = 120 bits (132), Expect = 5e-23 Identities = 174/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||| ||||| || || Sbjct 6630 GCGAAGCGGCACCGCAAGGTC-CTCCGGGACAACATCCAGGGCATCACGAAGCCGGCCAT 6572 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| || || | |||| || |||| Sbjct 6571 CCGCCGCCTGGCCCGCCGCGGCGGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 6512 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 6511 CCGCGGGGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 6452 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || | || || Sbjct 6451 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGAGGCAGGG 6392 Query 16672 CCG 16674 ||| Sbjct 6391 CCG 6389 >seq138515 Length=1543 Score = 114 bits (126), Expect = 2e-21 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || ||||| || ||||| Sbjct 1089 CTGCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGGCTGGCCCGCCGTGGC 1030 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || ||| || |||| || |||| || | || ||||||||||| Sbjct 1029 GGGGTGAAGCGGATCAGCGGACTGATCTACGAGGAGACCCGCGGCGTGCTGAAGATCTTC 970 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || | ||| || |||||||| || ||||| || Sbjct 969 CTGGAGAACGTGATCCGCGACGCCGTGACCTACACGGAGCACGCGCGCCGGAAGACGGTG 910 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| |||| ||||| Sbjct 909 ACCGCCATGGACGTCGTGTATGC 887 >seq124056 Length=4385 Score = 114 bits (126), Expect = 2e-21 Identities = 187/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||| ||||| || || Sbjct 2645 GCCAAGCGGCACCGCAAGGTC-CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGAT 2587 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || ||||| || || || |||| || |||| Sbjct 2586 CCGCCGCCTGGCGCGGCGGGGCGGCGTGAAGCGCATCAGCGGGCTGATCTACGAGGAGAC 2527 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||||||||||| ||| ||| ||| ||||| || ||| ||||| Sbjct 2526 CCGGGGCGTCCTCAAGATCTTCCTTGAGAACGTGATCAGGGATGCCGTCACCTACACCGA 2467 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| || || ||||||| ||||||| || | || | || || Sbjct 2466 GCACGCCCGCCGCAAGACGGTGACGGCCATGGACGTCGTCTACGCGCTCAAGAGGCAGGG 2407 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||| | | ||||| || || |||| Sbjct 2406 CCGGACCCTGTATGGGTTCGGCGGTTA 2380 >seq38807 Length=4307 Score = 109 bits (120), Expect = 9e-20 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 1797 CTGCGTGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGCCTGGCCCGCCGGGGC 1856 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || ||| || |||| || |||| || | || | ||||||||| Sbjct 1857 GGCGTGAAGCGCATCAGTGGGCTGATCTACGAGGAGACCCGCGGGGTGCTCAAGATCTTC 1916 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || | ||| ||||||||||| || ||||| ||| Sbjct 1917 CTGGAGAACGTGATCCGCGACGCCGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTC 1976 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| |||| || || Sbjct 1977 ACCGCCATGGACGTCGTGTACGC 1999 >seq64776 Length=3680 Score = 102 bits (112), Expect = 1e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| || || Sbjct 3453 CTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGGCTGGCTCGCCGGGGC 3394 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| || || | |||| || |||| || | || | ||||||||| Sbjct 3393 GGGGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGATCTTC 3334 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| || || | ||| ||||||||||| || ||||| || Sbjct 3333 TTGGAGAACGTGATCCGCGACGCCGTGACCTACACCGAGCACGCCCGGCGGAAGACCGTG 3274 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | || || || | || || || ||||| Sbjct 3273 ACGGCCATGGACGTGGTGTACGCGCTCAAGCGGCAGGGCCG 3233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78824678967693