Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq32040 168 2e-37 seq72959 143 8e-30 seq4239 141 3e-29 seq243164 138 3e-28 seq4237 134 4e-27 seq48412 86.0 2e-12 >seq32040 Length=2773 Score = 168 bits (186), Expect = 2e-37 Identities = 205/277 (74%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 19548 GATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGA 19607 ||||| |||||||||||||||||||| ||| | || |||| | ||||||||| | || Sbjct 2262 GATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGT 2321 Query 19608 GTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGG 19667 ||||| ||| ||| | |||||||| | || | | | || ||| | || ||| Sbjct 2322 GTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTTGG 2381 Query 19668 ATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCC 19726 || || |||||| |||| || | |||| ||| |||||| ||||| | | ||||| Sbjct 2382 ATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCC 2440 Query 19727 ATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTT 19786 | |||| ||| | |||||| ||||||||||||| || || ||||||||||| ||||| Sbjct 2441 AATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTT 2500 Query 19787 TATGTTCGTATTCCAAGCAGAACACAATATCCTTATG 19823 ||| | |||||||| || || ||||| ||||||||| Sbjct 2501 CATGATTGTATTCCAGGCTGAGCACAACATCCTTATG 2537 >seq72959 Length=7288 Score = 143 bits (158), Expect = 8e-30 Identities = 141/181 (78%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 19991 TGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTC 20050 ||| || || || ||||| ||||||| || ||||||||| |||||| ||||||||||| Sbjct 819 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 760 Query 20051 TTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAAT 20110 |||||||||||| || | | ||| || || || || || || | || | | || || Sbjct 759 TTTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGATTCACTGCTTTAGGTAT 700 Query 20111 CTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCA 20169 | ||||||||||||||||||| |||||||| || || ||||| || |||||||| |||| Sbjct 699 CAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCATAGTTGATAGTCA 640 Query 20170 A 20170 | Sbjct 639 A 639 >seq4239 Length=6188 Score = 141 bits (156), Expect = 3e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 19968 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATAT 20027 ||||| || |||||||| | ||||| || || || ||||| ||||||| || | |||| Sbjct 1216 GAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCCATAT 1275 Query 20028 GCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGC 20087 ||| |||||| |||||||||||||| || ||||| || ||| ||| || || || || Sbjct 1276 GCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 1335 Query 20088 ATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTT 20147 || | | | || | | || ||| ||| | ||||||||||||| |||||||| || || Sbjct 1336 ATCTAGTTCACTACTTTAGGTATCGGCATTGTGGCTTTCAACCTAAATGGTTTCAATTTC 1395 Query 20148 AACCAGTCAGTAGTTGAT 20165 ||||| || ||| ||||| Sbjct 1396 AACCAATCCGTAATTGAT 1413 >seq243164 Length=1121 Score = 138 bits (152), Expect = 3e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 20062 TTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGG 20121 |||| ||| ||| || || || || || ||| | || | | || ||| ||||||||| Sbjct 1119 TTCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGG 1060 Query 20122 CTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATA 20180 |||||||||| |||||||| || || ||||| || ||||||||| ||||| || || Sbjct 1059 CTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAA-GGTCGTGTA 1001 Query 20181 ATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAG 20240 || || ||||||||| | | ||| | |||||||| || | ||||||||||| || Sbjct 1000 ATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAA 941 Query 20241 CGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 || ||||||||||||||||| || || ||||| Sbjct 940 CGTAATGCTCATAACTTCCCTCTAGACCTAGCT 908 >seq4237 Length=12380 Score = 134 bits (148), Expect = 4e-27 Identities = 153/204 (75%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 19968 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATAT 20027 ||||| || |||||||| | ||||| | || || ||||| ||||||| || |||||| Sbjct 9152 GAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTTCCAATAT 9211 Query 20028 GCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGC 20087 ||| |||||| ||||||||||||||||| ||||| || ||||||| | || || || Sbjct 9212 GCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTGTAGTAGGT 9271 Query 20088 ATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTT 20147 || | | | || | | || ||| || ||||||||| ||||| |||||||| || || Sbjct 9272 ATCTAGTTCACTGCTTTAGGTATCAACATTATGGCTTTTAACCTAAATGGTTTCAATTTC 9331 Query 20148 AACCAGTCAGTAGTTGAT-GTCAA 20170 || || || || ||||| ||||| Sbjct 9332 AATCAATCCGTGATTGATAGTCAA 9355 >seq48412 Length=5542 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 19764 GGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATG 19823 || ||| ||||||||| || || ||| | ||| |||| || || ||||| ||||||||| Sbjct 2082 GGAATCCGTGGTACTTTCAATTTCATGATTGTACTCCAGGCTGAGCACAACATCCTTATG 2023 Query 19824 CATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATG 19883 || || || |||||| | || | ||||| |||||||| || | || ||| ||||||| Sbjct 2022 CACCCATTTCACATGTTAGGCATAGCTGGTGTATTCGGCGGCTTCCTATTCAGTGCTATG 1963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143971621428756