Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq243164 154 2e-32 seq32040 143 4e-29 seq4239 114 2e-20 seq4237 105 1e-17 seq72959 104 4e-17 seq122826 89.7 8e-13 >seq243164 Length=1121 Score = 154 bits (170), Expect = 2e-32 Identities = 154/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 212353 TGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTA 212412 |||||||| | || | ||||| || || | |||||| |||| ||||| ||||||||| Sbjct 1108 TGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTA 1049 Query 212413 AATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGG 212472 ||||| ||||| ||||||||||| || |||||| |||| || || ||| ||| Sbjct 1048 AATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGG 989 Query 212473 GGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACAC 212532 | |||| || |||| | || ||||||||||||||||||||||| ||| | ||||| || Sbjct 988 GCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCAT 929 Query 212533 AACTTCCCACTTGACTTAGC 212552 |||||||| || ||| |||| Sbjct 928 AACTTCCCTCTAGACCTAGC 909 >seq32040 Length=2773 Score = 143 bits (158), Expect = 4e-29 Identities = 202/284 (71%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 211823 CTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTA 211882 || ||||||| ||| | ||||| || |||||||| || | | | | |||||| | Sbjct 2257 CTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTAC 2316 Query 211883 TCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTC 211942 | || | | |||||||| | |||||||| || | |||| | |||||||| | Sbjct 2317 TTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCC 2376 Query 211943 CTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTT 212002 ||||||| |||||| |||||||| ||||| |||| ||| ||||| ||| | | | Sbjct 2377 CTTGGATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCT 2436 Query 212003 ACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCA 212062 ||||| | ||||| | || | | ||||||||| |||| || || || || |||| Sbjct 2437 ACCCAATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCA 2496 Query 212063 ACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCAC 212106 |||||||| | |||||||| || || || |||||||||||| || Sbjct 2497 ACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGTAC 2540 >seq4239 Length=6188 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 212248 GAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTAT 212307 ||||| || ||||| ||| | ||||| ||||| || || || || | ||||||| ||| Sbjct 1216 GAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCCATAT 1275 Query 212308 GCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGT 212367 || |||||||| | ||| ||||||||||| || | |||||||| | || Sbjct 1276 GCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 1335 Query 212368 GTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTC 212427 | | ||| || || | |||||| ||| |||| |||||||||||||| ||||| ||| Sbjct 1336 ATCTAGTTCACTACTTTAGGTATCGGCATTGTGGCTTTCAACCTAAATGGTTTCAATTTC 1395 Query 212428 AACCAATCAGTTGTTGAT 212445 |||||||| || ||||| Sbjct 1396 AACCAATCCGTAATTGAT 1413 >seq4237 Length=12380 Score = 105 bits (116), Expect = 1e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 212248 GAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTAT 212307 ||||| || ||||| ||| | ||||| | ||| || || || || | |||||||| ||| Sbjct 9152 GAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTTCCAATAT 9211 Query 212308 GCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGT 212367 || |||||||| | ||||||||||||||| || | |||| ||| | || Sbjct 9212 GCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTGTAGTAGGT 9271 Query 212368 GTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTC 212427 | | ||| || || | |||||| || ||||| || ||||||||||| ||||| ||| Sbjct 9272 ATCTAGTTCACTGCTTTAGGTATCAACATTATGGCTTTTAACCTAAATGGTTTCAATTTC 9331 Query 212428 AACCAATCAGTTGTTGAT 212445 || ||||| || ||||| Sbjct 9332 AATCAATCCGTGATTGAT 9349 >seq72959 Length=7288 Score = 104 bits (114), Expect = 4e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 212271 TGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAG 212330 ||| ||||| || || || || | |||||||| ||||| |||||||| | Sbjct 819 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 760 Query 212331 TTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTAT 212390 |||||| |||||||| | | |||||||| | || | || || || || | ||||| Sbjct 759 TTTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGATTCACTGCTTTAGGTAT 700 Query 212391 CTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 | |||| ||||| |||||||||||||| ||||| ||||||||||| | |||||| Sbjct 699 CAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCATAGTTGAT 645 >seq122826 Length=4518 Score = 89.7 bits (98), Expect = 8e-13 Identities = 121/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 194602 CTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACCTATCCTGCCGATTTCAT- 194660 ||||||||||||||||| || || || || || || || || || |||||||| Sbjct 717 CTTGCTGCTGCTAAGGTCGGCGGCATCCATGCCAATAACACGTACCCGGCAGATTTCATT 776 Query 194661 -CTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGCATATCGTAATGGAGTTA 194719 | || |||||| ||| ||||| ||||| ||||| | || |||| |||| || | Sbjct 777 GCCAT--CAATCTTCAGATACAGACCAATGTCATTGACTCCGCCCATCGCCATGGCGTCA 834 Query 194720 AGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTTTCCA 194766 |||| || |||||| | || || |||||||| ||||| || ||| || Sbjct 835 AGAAGCTCTTGTTTTTGGGATCTTCTTGCATTTATCCGAAATTTGCA 881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 804789313345560