Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq117103 91.5 1e-13 seq103813 91.5 1e-13 seq64482 91.5 1e-13 seq6155 89.7 5e-13 seq115376 86.0 6e-12 seq112091 86.0 6e-12 >seq117103 Length=17306 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || || |||| || ||||||| | || | || Sbjct 8714 AATGCAAATCTTTGTGAAGACCCTAGCTGGGAAGACGATCACGTTGAAAGTTGAGAGCTC 8655 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | |||||| || ||| ||||| ||||| || || || ||||| Sbjct 8654 CGACACCATCGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 8595 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||||| || || | | || |||||||| || |||| ||| || | || || |||| Sbjct 8594 GCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAG-GACTTTGGCAGATTATA 8536 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || || || || ||| | || |||| ||| |||| || || || Sbjct 8535 ACATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGACTGAGGGGGGG 8487 >seq103813 Length=13362 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| ||||| ||||| ||||| || |||||||| || Sbjct 12506 CGACACCATCGACAACGTCAAGGCCAAGATACAGGACAAGGAAGGCATCCCTCCCGACCA 12447 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || ||||| | || ||| || || |||||||| | | | | |||||| || Sbjct 12446 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTCGAAGACGGCCGCACACTGGCCGACTACAA 12387 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || ||||| || || ||||||| |||||||| || | ||||| Sbjct 12386 CATCCAGAAAGAGTCGACGCTCCATCTCGTCCTGAGGCTCCGCGGAGG 12339 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 12278 CGACACCATCGACAACGTCAAGGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGACCA 12219 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || ||||| | || ||| || || |||||||| | | | | || ||| || || Sbjct 12218 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTCGAAGACGGCCGCACCCTCGCCGATTACAA 12159 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 |||||| || || || || ||||||| |||||||| || Sbjct 12158 CATTCAGAAGGAGTCGACCCTCCATCTCGTCCTGAGGCT 12120 >seq64482 Length=1502 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || || | |||||||| | ||||| | ||| | || Sbjct 57 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTC 116 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | |||||| ||| ||| ||||| ||||| || || || ||||| Sbjct 117 TGACACCATCGACAATGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 176 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || |||| | || ||||| || || |||| ||| | | || ||||| Sbjct 177 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATAA 236 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || ||||| || ||| | || |||| ||| | || || ||||| Sbjct 237 CATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGG 284 >seq6155 Length=1835 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || || Sbjct 864 CGACACCATCGACAACGTCAAGGCCAAGATACAGGACAAGGAAGGCATCCCTCCGGACCA 805 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || ||||| | || ||| || || |||||||| | | | | || ||| || || Sbjct 804 GCAGAGGCTCATCTTCGCCGGGAAGCAGCTCGAAGACGGCCGCACCCTCGCCGATTACAA 745 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 |||||| || || || || ||||||| |||||||| || Sbjct 744 CATTCAGAAGGAGTCGACGCTCCATCTCGTCCTGAGGCT 706 >seq115376 Length=10371 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | ||||| || | |||||| |||| | ||| Sbjct 6755 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 6814 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||| | || ||| ||| || ||||| |||||||| ||||| || || Sbjct 6815 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 6874 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||||| || || ||||||| ||| | | ||| |||||| Sbjct 6875 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 6934 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || |||| |||| || | || || ||||| Sbjct 6935 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCAGGGGAGG 6981 >seq112091 Length=14418 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | ||||| || | |||||| |||| | ||| Sbjct 12931 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 12872 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| |||| | || ||| ||| || ||||| |||||||| ||||| || || Sbjct 12871 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 12812 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||||| || || ||||||| ||| | | ||| |||||| Sbjct 12811 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 12752 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || |||| |||| || | || || ||||| Sbjct 12751 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCAGGGGAGG 12705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477022975296720