Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq107102 104 2e-17 seq117103 95.1 1e-14 seq115376 84.2 2e-11 seq112091 84.2 2e-11 >seq107102 Length=7485 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| |||||||| || | || || || || || || ||||| || | Sbjct 4412 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 4353 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 ||| | ||| | | || ||| |||||| ||||| |||||| ||||| ||||| Sbjct 4352 CGACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 4293 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||||||||||| | ||| || |||||| | || ||| || ||| |||| ||||| || Sbjct 4292 GCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACAA 4233 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || || || || || ||| |||| ||| | || |||| Sbjct 4232 CATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGACTGAGGGGAGGCA 4183 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| ||||||||||| || ||||||| || ||||| || |||| |||| Sbjct 3956 AATGCAGATTTTTGTCAAGACTCTGACCGGTAAGACCATCACTCTGGAGGTGGAAAGTTC 3897 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | | | | | || || || || || || || ||| | || || || Sbjct 3896 AGACACCATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCGGACCA 3837 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||||| |||| ||| || || ||| |||||||| | || ||||||||||||| Sbjct 3836 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGATGGGAGGACACTGGCCGATTATAA 3777 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 ||| || ||||| || || || || ||||| | ||||||||||| ||| Sbjct 3776 TATTCAGAAAGAGTCGACTCTGCACTTAGTCCTTCGTCTGCGCGGCGGC 3728 >seq117103 Length=17306 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 111271 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111330 |||||| ||||| |||||| ||||| ||||| ||||||||||| | ||| || ||| Sbjct 8629 AAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGCAAAGGCTTATCTTTGCTGGGAAA 8570 Query 111331 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111390 ||| | || ||| || ||| |||| |||||||| || || || || || || || || Sbjct 8569 CAACTTGAGGATGGTAGGACTTTGGCAGATTATAACATCCAGAAGGAGTCCACTCTTCAC 8510 Query 111391 TTAGTGTTGCGTCTGCGCGGTGGCA 111415 || ||| |||| ||| | || |||| Sbjct 8509 TTGGTGCTGCGACTGAGGGGGGGCA 8485 >seq115376 Length=10371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || ||||| || || ||| | || |||| | Sbjct 6755 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 6814 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111305 || | || | | || ||| |||||| ||||| ||||| | |||| || | || Sbjct 6815 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGG-GATCCCTCCGGACCA 6873 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || |||||||| | ||| ||||| || |||||||| ||| ||||||||||||| Sbjct 6874 GCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAA 6933 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || || || || || ||| | ||||| | || |||| Sbjct 6934 CATTCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCAGGGGAGGCA 6983 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| || || | || ||||| || || ||| | || |||| | | Sbjct 6983 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCC 7042 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| ||||| |||||| | || || || Sbjct 7043 GACACAATTGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 7102 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||||||| | ||| ||||| || |||||||| ||| |||| |||||||| Sbjct 7103 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCTGATTATAAC 7162 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || || || || || ||| | ||||| | || |||| Sbjct 7163 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCAGGGGAGGCA 7211 >seq112091 Length=14418 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| || || | || ||||| || || ||| | || |||| | | Sbjct 12703 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCC 12644 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || ||| |||||| ||||| |||||| | || || || Sbjct 12643 GACACAATTGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 12584 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||||||| | ||| ||||| || |||||||| ||| |||| |||||||| Sbjct 12583 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCTGATTATAAC 12524 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || || || || || ||| | ||||| | || |||| Sbjct 12523 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCAGGGGAGGCA 12475 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| ||||| | || ||||| || || ||| | || |||| | Sbjct 12931 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 12872 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111305 || | || | | || ||| |||||| ||||| ||||| | |||| || | || Sbjct 12871 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGG-GATCCCTCCGGACCA 12813 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || |||||||| | ||| ||||| || |||||||| ||| ||||||||||||| Sbjct 12812 GCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAA 12753 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || || || || || ||| | ||||| | || |||| Sbjct 12752 CATTCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCAGGGGAGGCA 12703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421627305644200