Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq109320 149 1e-30 seq122513 134 3e-26 seq273876 93.3 9e-14 seq94026 93.3 9e-14 seq66414 93.3 9e-14 seq51291 93.3 9e-14 seq11701 93.3 9e-14 seq6792 93.3 9e-14 seq72858 89.7 1e-12 seq120059 87.8 4e-12 seq115302 87.8 4e-12 seq103173 87.8 4e-12 seq87553 87.8 4e-12 seq53878 87.8 4e-12 seq10909 87.8 4e-12 >seq109320 Length=8125 Score = 149 bits (164), Expect = 1e-30 Identities = 547/849 (64%), Gaps = 17/849 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| ||| ||||| |||||||| ||||||| ||||| || Sbjct 2410 TCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTTCGTC 2351 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | | |||| |||| | ||| || || ||| | ||||| || || ||||| | Sbjct 2350 ACGTCGTACACCTTGCCACAGCCGAGCGCGCCGAGCAGCCGGTCGGCGACGAACTCGATG 2291 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||| || ||||| || |||||| || | || || || | || || |||| | Sbjct 2290 CACTTGCCGATCAGGTCGCTGTTCATCCCCACCAGGGCGCACGGCAGCGCGTCGCAGACG 2231 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||| ||| || | || |||||| ||| || ||||||| | || | || Sbjct 2230 AACTCCCGCTCGATGTCGACGGCCTCCCGCACGATCCCCTTCACACGCTCCTCGCTCGGC 2171 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 |||||| |||| ||||| ||||| | | || | ||| || ||||||||||| Sbjct 2170 TTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGG 2111 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||||| |||||| || | || || ||||| | || || ||| ||||||||||| Sbjct 2110 GAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCCCGCTTCTTGAGCCAGAAG 2051 Query 251923 ATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGC 251982 || ||||| ||| || ||||| | | |||||||| || | | || | |||||| Sbjct 2050 ATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCGACGCAGGCGAAGGCCAGGAGGCGC 1991 Query 251983 TCAGCAAACGACTTGTCCTGCGAC-AAGAACTTCTGTGCCCATGCTGCCTTCTTTCCAAC 252041 || || || ||| | || || | | | | ||||| | ||||| | || Sbjct 1990 TCCGCGAAGGAC-TCACCGCCGTCGATCCAGCGGAGGGCCCAGTCGGCCTTGCGGGCGAC 1932 Query 252042 CGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATGAG 252101 || |||| || |||| ||| ||||| || | |||||| ||||| || | Sbjct 1931 GGCCGGGACGGTGTCGACGGCACGGAAGAGGCGGTCCTTCTCGGCGGAGTCCTTGACGTA 1872 Query 252102 CGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAAGC 252161 | || || ||||| ||||||||| || |||||| ||| || |||||| | | Sbjct 1871 GGTCTCCAGTAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCC 1812 Query 252162 ATAGAATAGACGCGCG----GAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATGT 252217 |||| || |||| | || | | ||| ||| | ||| | || | || Sbjct 1811 GTAGA--AGGCGCGGGCCTCCGAGAGCTG--GACCTCCTTCATGAAGCGGACGGCGAGGT 1756 Query 252218 TCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGAC 252277 |||| | || ||||| ||| | | || |||||| | || | | ||| ||| || | Sbjct 1755 TCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGTGACGAAATGGC 1696 Query 252278 GCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AACTTC 252335 |||| ||| || |||| | | ||||| | | |||||| ||||| || || Sbjct 1695 GCTCGTCGGCGGTGAG---GCCCTCCCAGTGGCGGAGGTCCTG--GGAGAGGTCGACCTC 1641 Query 252336 TTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGTACTT 252395 || | |||||||| | || | |||||| ||||||||| | | | | ||||||| Sbjct 1640 CTCGGCGGTCCAGAAGGAGGCCTCCGCCTGCTTGTACATCTCCCAGATCTGCGGGTACTG 1581 Query 252396 GATTGGGAA 252404 ||| ||||| Sbjct 1580 GATAGGGAA 1572 >seq122513 Length=1399 Score = 134 bits (148), Expect = 3e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || ||||| | |||| ||||||||||||||| || | || || || || | || Sbjct 386 TCAATTCCTTCCATGGTTGATGGCCTCAAGCCAGGTCAAAGGAAAATTCTATTCTGCTCA 445 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || || |||| | | ||||| ||||| || |||||||||||||||||||| ||| Sbjct 446 TTTAAAAGGAATTTCATCAAAGAAGCAAAGGTTGCCCAGTTTTCTGGTTATGTATCTGAA 505 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 ||| | |||||||| |||||||| ||||| || |||| | || ||||||||| Sbjct 506 CATTCAGCATACCATCATGGTGAGCAAAGTCTTGCTAGTACCATCATTGGAATGGCACAG 565 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 || ||||| ||||| |||||||| ||| | || | || || || || ||||| |||| Sbjct 566 GATTATGTAGGCAGCAACAACATTAACCTTCTCATGCCGAATGGCCAATTTGGGACTCG 624 >seq273876 Length=3735 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2297 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2356 Query 142563 CCCCAC 142568 |||||| Sbjct 2357 CCCCAC 2362 >seq94026 Length=19013 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 13259 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13318 Query 142563 CCCCAC 142568 |||||| Sbjct 13319 CCCCAC 13324 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 13411 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 13470 Query 142563 CCCCAC 142568 |||||| Sbjct 13471 CCCCAC 13476 >seq66414 Length=5141 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 574 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 515 Query 142563 CCCCAC 142568 |||||| Sbjct 514 CCCCAC 509 >seq51291 Length=1930 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1364 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1423 Query 142563 CCCCAC 142568 |||||| Sbjct 1424 CCCCAC 1429 >seq11701 Length=14504 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 10935 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10994 Query 142563 CCCCAC 142568 |||||| Sbjct 10995 CCCCAC 11000 >seq6792 Length=9215 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 673 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 614 Query 142563 CCCCAC 142568 |||||| Sbjct 613 CCCCAC 608 >seq72858 Length=3213 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 |||| |||||||||| |||| || | || || || || | |||| || |||| Sbjct 1484 TGGTTGATGGCCTCAGGCCAGAACAAAGGAAAATTCTTTTCTGCTCATTTAAAGGGAATT 1425 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | | ||||| ||||| || ||||||| |||||||||||| || ||| |||| Sbjct 1424 TCATCAAAGAAGCAAAGGTTGCCCAGTTTTGTGGTTATGTATCTCAACATTCACCATACC 1365 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 ||| || ||||| ||||| || |||| | || ||||||| ||| ||||| |||| Sbjct 1364 GTCATGGCGAGCAAAGTCTTGCTAGTACCATAATTGGAATGGCACGGGATTATGTAGGCA 1305 Query 218762 GTAACAACATGAAC 218775 | || ||||| ||| Sbjct 1304 GCAAAAACATTAAC 1291 >seq120059 Length=5943 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3121 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3062 Query 142563 CCCCAC 142568 |||||| Sbjct 3061 CCCCAC 3056 >seq115302 Length=4857 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2855 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2796 Query 142563 CCCCAC 142568 |||||| Sbjct 2795 CCCCAC 2790 >seq103173 Length=7330 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5710 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5769 Query 142563 CCCCAC 142568 |||||| Sbjct 5770 CCCCAC 5775 >seq87553 Length=7996 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 158 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 217 Query 142563 CCCCAC 142568 |||||| Sbjct 218 CCCCAC 223 >seq53878 Length=5377 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3964 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3905 Query 142563 CCCCAC 142568 |||||| Sbjct 3904 CCCCAC 3899 >seq10909 Length=9764 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5799 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5858 Query 142563 CCCCAC 142568 |||||| Sbjct 5859 CCCCAC 5864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1024228437264841