Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq115376 89.7 4e-13 seq112091 89.7 4e-13 seq107102 86.0 4e-12 seq117102 84.2 2e-11 >seq115376 Length=10371 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || ||||| || || ||| | || |||| | | Sbjct 6755 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 6814 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || || | || | || |||||| || || || || | ||| |||| Sbjct 6815 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 6874 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||||||||| || || |||||| ||| |||||||||| || Sbjct 6875 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 6934 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || || || || |||| | ||| | | ||||| Sbjct 6935 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCAGGGGAGG 6981 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 21918 AAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAA 21977 |||||| || ||||||||| | ||| |||| || || || ||||||||||| ||| Sbjct 7751 AAAATTCAGGACAAAGAGGGTATTCCTCCGGACCAGCAAAGGCTGATCTTTGCTGGTAAA 7810 Query 21978 CAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAT 22037 ||||| |||||| | || ||||||| ||||| || || |||||||| || ||||| Sbjct 7811 CAACTTGAAGATGGCAGGACATTGGCCGACTACAACATCCAAAAGGAATCGACCCTTCAC 7870 Query 22038 ATGGTATTACGTTTACGAGGAGGA 22061 | || ||||| | || || ||| Sbjct 7871 CTTGTCCTACGTCTCCGTGGTGGA 7894 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || | || || || ||||| || |||| |||| | | Sbjct 7438 AATGCAGATTTTTGTGAAGACGCTTACTGGGAAGACCATAACTTTGGAGGTGGAAAGCTC 7497 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || ||||| ||||| || || |||||| | || |||| Sbjct 7498 CGACACCATTGACAATGTTAAGGCGAAAATCCAAGACAAGGAGGGTATTCCCCCGGACCA 7557 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||||| |||||||||||||| || || |||||| | ||| | || || || || Sbjct 7558 GCAGAGACTCATCTTTGCTGGCAAGCAGCTTGAAGATGGCAGGACTCTTGCAGACTATAA 7617 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||| || |||||||| || |||| Sbjct 7618 CATCCAGAAAGAGTCTACTCTCCACTTGGT 7647 >seq112091 Length=14418 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 21918 AAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAA 21977 |||||| || ||||||||| | ||| |||| || || || ||||||||||| ||| Sbjct 11935 AAAATTCAGGACAAAGAGGGTATTCCTCCGGACCAGCAAAGGCTGATCTTTGCTGGTAAA 11876 Query 21978 CAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAT 22037 ||||| |||||| | || ||||||| ||||| || || |||||||| || ||||| Sbjct 11875 CAACTTGAAGATGGCAGGACATTGGCCGACTACAACATCCAAAAGGAATCGACCCTTCAC 11816 Query 22038 ATGGTATTACGTTTACGAGGAGGA 22061 | || ||||| | || || ||| Sbjct 11815 CTTGTCCTACGTCTCCGTGGTGGA 11792 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || ||||| || || ||| | || |||| | | Sbjct 12931 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 12872 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || || | || | || |||||| || || || || | ||| |||| Sbjct 12871 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 12812 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||||||||| || || |||||| ||| |||||||||| || Sbjct 12811 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 12752 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || || || || |||| | ||| | | ||||| Sbjct 12751 ATTCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCAGGGGAGG 12705 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || | || || || ||||| || |||| |||| | | Sbjct 12248 AATGCAGATTTTTGTGAAGACGCTTACTGGGAAGACCATAACTTTGGAGGTGGAAAGCTC 12189 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || ||||| ||||| || || |||||| | || |||| Sbjct 12188 CGACACCATTGACAATGTTAAGGCGAAAATCCAAGACAAGGAGGGTATTCCCCCGGACCA 12129 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||||| |||||||||||||| || || |||||| | ||| | || || || || Sbjct 12128 GCAGAGACTCATCTTTGCTGGCAAGCAGCTTGAAGATGGCAGGACTCTTGCAGACTATAA 12069 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||| || |||||||| || |||| Sbjct 12068 CATCCAGAAAGAGTCTACTCTCCACTTGGT 12039 >seq107102 Length=7485 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| |||||||||||||| || || || || ||| | ||| |||| |||| Sbjct 4980 ACCAGCAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAGGATGGACGCACTTTGGCTGATT 4921 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 | || |||||||||||||| || |||||| |||| | ||| | | ||||| Sbjct 4920 ATAACATTCAGAAGGAATCCACCCTTCATTTGGTTCTCCGTCTCAGGGGAGG 4869 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || |||| || || || || || ||||| || | | Sbjct 4412 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 4353 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | || |||||| || || || || | || | | || Sbjct 4352 CGACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 4293 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || |||||||||||||| |||||||| || ||| | ||| |||| |||||||| Sbjct 4292 GCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACAA 4233 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||| || |||||||| |||| Sbjct 4232 CATCCAGAAGGAGTCCACTCTTCACTTGGT 4203 >seq117102 Length=5212 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| |||||||||||||| || || || || ||| | ||| |||| |||| Sbjct 651 ACCAGCAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAGGATGGACGCACTTTGGCTGATT 592 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 | || |||||||||||||| || |||||| |||| Sbjct 591 ATAACATTCAGAAGGAATCCACCCTTCATTTGGT 558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356928882631354