Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq109320 394 2e-104 >seq109320 Length=8125 Score = 394 bits (436), Expect = 2e-104 Identities = 612/867 (71%), Gaps = 18/867 (2%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || ||| | | |||||| ||||||||| ||||| || |||| |||||||||| Sbjct 1578 ATCCAGTACCCGCAGATCTGGGAGATGTACAAGCAGGCGGAGGCCTCCTTCTGGACCGCC 1637 Query 42345 GAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAG----TCACTGTCTGAGAACG 42399 |||||| | ||||| || ||||| | ||| ||||||| |||| | | || || Sbjct 1638 GAGGAGGTCGACCTCTCCCAGGACCTCCGCCA-CTGGGAGGGCCTCACCGCCGACGAGCG 1696 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | |||| ||| || | || ||||||||||||||||| |||||||| ||| | Sbjct 1697 CCA----TTTCGTCACCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCG 1752 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 ||||||| ||| | | |||||||| ||||| ||| || ||||| ||| |||||||| Sbjct 1753 AGAACCTCGCCGTCCGCTTCATGAAGGAGGTCCAGCTCTCGGAGGCCCGCGCCTTCTACG 1812 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 |||||||||| ||||| |||||| | ||||| ||| ||||| | || || | || | Sbjct 1813 GCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTACTGGAGACCT 1872 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 || || ||| ||| |||| || | || ||| ||| | || || | || | Sbjct 1873 ACGTCAAGGACTCCGCCGAGAAGGACCGCCTCTTCCGTGCCGTCGACACCGTCCCGGCCG 1932 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 || ||||| |||||||| ||| ||||||||| | || | | |||| | Sbjct 1933 TCGCCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGG---CGGTGAGTCCTTCGCGG 1989 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 || | || | ||||| || ||||||||| ||||||||||| ||| |||| | ||| Sbjct 1990 AGCGCCTCCTGGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGCAGCTTCTGCGCCA 2049 Query 42760 TCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 |||||||||||||| || || ||||| || ||||||||||||||||| |||||| Sbjct 2050 TCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTCTCGAACGAGCTCATCT 2109 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGC 42879 | | |||||||| || || | ||||| ||||||||||| | |||| | || || Sbjct 2110 CCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCG---CTGCTGCGGA 2166 Query 42880 ACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 ||||||| ||||||| || || ||| | ||||||||| || |||||| || Sbjct 2167 ACAAGCCGAGCGAGGAGCGTGTGAAGGGGATCGTGCGGGAGGCCGTCGACATCGAGCGGG 2226 Query 42940 AGTTCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGC 42998 ||||| || | ||||| ||||| ||||||| || |||||| |||||| || || Sbjct 2227 AGTTCGTCTGCGACGCGCTG-CCGTGCGCCCTGGTGGGGATGAACAGCGACCTGATCGGC 2285 Query 42999 AAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTAC 43058 |||| |||| ||| ||||||||||| || || || | | || || | ||| Sbjct 2286 AAGTGCATCGAGTTCGTCGCCGACCGGCTGCTCGGCGCGCTCGGCTGTGGCAAGGTGTAC 2345 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 || | || ||| ||||||| |||||| ||||||| || |||| ||||||||||| Sbjct 2346 GACGTGACGAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAACTTC 2405 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||| |||| || |||||| Sbjct 2406 TTCGAGAAGCGGGTCGGGGAGTACCAG 2432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941104826435760