Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq115376 100 2e-16 seq112091 100 2e-16 seq107869 96.9 3e-15 seq167565 95.1 1e-14 seq88321 91.5 1e-13 seq71604 89.7 4e-13 seq107102 86.0 5e-12 seq44578 84.2 2e-11 seq88322 82.4 6e-11 >seq115376 Length=10371 Score = 100 bits (110), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || ||||||| || || ||| ||||||||||||||| ||||| ||| Sbjct 6981 CCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCC 6922 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || |||| |||||||| ||||| || || | |||||| ||| || Sbjct 6921 AAGGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 6862 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATC-AGT-------AG 34072 | | || |||||| | ||||||||| ||||| |||| | | || Sbjct 6861 ATCCCTTCCTTGTCC-TGGATTTTTGCTT--------TCACATTATCGACTGTGTCCGAG 6811 Query 34073 ATTCGCA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || |||| || ||||| || || || || |||||||||||||||||||| Sbjct 6810 CTTTCCACCTCGAGGGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 6755 Score = 100 bits (110), Expect = 2e-16 Identities = 164/236 (69%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || ||||||| || || ||| ||||||||||||||| ||||| ||| Sbjct 7209 CCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCAGCC 7150 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || |||| |||||||| ||||| || || | |||||| || || Sbjct 7149 AAGGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGG 7090 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | || || |||||| | ||||||||| ||||| ||||| | | || | Sbjct 7089 ATGCCTTCCTTGTCC-TGGATTTTTGCTT--------TCACATTATCAATTGTGTCGGAG 7039 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| ||| || ||||| || || || || || |||||||| |||||||| Sbjct 7038 CTTTCCACCTCGAGGGTGATTGTCTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 6983 >seq112091 Length=14418 Score = 100 bits (110), Expect = 2e-16 Identities = 164/236 (69%), Gaps = 18/236 (8%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || ||||||| || || ||| ||||||||||||||| ||||| ||| Sbjct 12477 CCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCAGCC 12536 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || |||| |||||||| ||||| || || | |||||| || || Sbjct 12537 AAGGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGG 12596 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | || || |||||| | ||||||||| ||||| ||||| | | || | Sbjct 12597 ATGCCTTCCTTGTCC-TGGATTTTTGCTT--------TCACATTATCAATTGTGTCGGAG 12647 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| ||| || ||||| || || || || || |||||||| |||||||| Sbjct 12648 CTTTCCACCTCGAGGGTGATTGTCTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 12703 Score = 100 bits (110), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 18/236 (8%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || ||||||| || || ||| ||||||||||||||| ||||| ||| Sbjct 12705 CCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCC 12764 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || |||| |||||||| ||||| || || | |||||| ||| || Sbjct 12765 AAGGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 12824 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATC-AGT-------AG 34072 | | || |||||| | ||||||||| ||||| |||| | | || Sbjct 12825 ATCCCTTCCTTGTCC-TGGATTTTTGCTT--------TCACATTATCGACTGTGTCCGAG 12875 Query 34073 ATTCGCA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || |||| || ||||| || || || || |||||||||||||||||||| Sbjct 12876 CTTTCCACCTCGAGGGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 12931 >seq107869 Length=8698 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| ||||||||| ||||| ||||| ||||||||||||||||||||| || Sbjct 7704 ACCTCCCCTCAACCGCAGCACAAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGC 7763 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || | ||||| || || || ||||| |||||||| ||| ||| Sbjct 7764 GAGGGTGCGACCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGG 7823 Query 34020 CACGCTCTCTTTGTCC 34035 | || || |||||| Sbjct 7824 GATGCCTTCCTTGTCC 7839 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| ||||| || || ||||| ||||||||| |||||||| || || Sbjct 7933 CCTCCGCGGAGCCTGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 7992 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | ||| || |||| || | ||||||||||| || |||||||||||||| ||| || Sbjct 7993 AGG-GTC-CTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCG 8050 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 8051 GGATGCCCTCCTTGTCC 8067 >seq167565 Length=877 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| ||||||||| ||||| ||||| ||||||||||||||||||||| || Sbjct 278 ACCTCCCCTCAACCGCAGCACAAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGC 337 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || | ||||| || || || ||||| |||||||| ||| ||| Sbjct 338 GAGGGTGCGACCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGCGG 397 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || ||||| ||||| ||| | | | |||||| || || || Sbjct 398 GATACCTTCCTTGTCTTGGATTTTGGCCTTGACGTTGTCTATTGTATCAG-AGCTTTCCA 456 Query 34080 -TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||| || || || ||||| || || || || ||||| ||||| Sbjct 457 CCTCGAGCGTGATGGTCTTCCCGGTCAGGGTCTTGACGAAGATCTGCAT 505 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| |||||| ||||| ||||| ||||||||| ||||||||||| || Sbjct 507 CCTCCACGGAGCCTCAGCACGAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGCG 566 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| || | ||||||||||| || ||||| |||||||| || Sbjct 567 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 619 >seq88321 Length=3664 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| ||||||||| ||||| ||||| ||||||||||||||||||||| || Sbjct 2474 ACCTCCCCTCAACCGCAGCACAAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGC 2533 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| || | ||||| || || || ||||| |||||||| ||| Sbjct 2534 GAGGGTGCGACCGTCTTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCC 2588 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| ||||| || || ||||| ||||||||| |||||||| || || Sbjct 3159 CCTCCGCGGAGCCTGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 3218 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | ||| || |||| || | ||||||||||| || |||||||||||||| ||| || Sbjct 3219 AGG-GTC-CTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCG 3276 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 3277 GGATGCCCTCCTTGTCC 3293 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| |||||| ||||| ||||| ||||||||| ||||||||||| || Sbjct 2931 CCTCCACGGAGCCTCAGCACGAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGCG 2990 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| || | ||||||||||| || ||||| |||||||| || Sbjct 2991 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 3043 >seq71604 Length=3038 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| ||||| || || || ||| ||||||||| ||||||||||| | | Sbjct 1989 CCTCCCCGGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATC-GGC 2047 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| | | ||||||||||| || |||||||||||||| ||| ||| Sbjct 2048 AAGGGTGCGGCCGTCCTGGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGACGG 2107 Query 34020 CACGCTCTCTTTGTCC 34035 | ||| | ||||||| Sbjct 2108 GATGCTTTTTTTGTCC 2123 >seq107102 Length=7485 Score = 86.0 bits (94), Expect = 5e-12 Identities = 165/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| |||||||||| ||||| ||| ||||||||| ||||||||||| ||| Sbjct 4185 CCTCCCCTCAGTCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCC 4244 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || || | ||| || || ||||| || || | |||||||| | Sbjct 4245 AA-AGTC-CTACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGGG 4302 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGAT- 34074 | | || || |||||| | | |||| |||| || | | || | || | || | Sbjct 4303 GAATGCCTTCCTTGTCC-TGAATTTTGGCTT--TGACATTGTCAATGGTGTC-GGAGCTC 4358 Query 34075 TCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || ||| | || || || || || ||||| || || ||||||||||||||| Sbjct 4359 TCAACTTCCAAAGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGCATT 4412 >seq44578 Length=5095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | || || ||||| || ||||| || ||||||||| ||||||||||| Sbjct 1047 GAATCCACCGCGGAGACGGAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC 1106 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||| ||| |||| |||| |||||||| || || ||||| | |||||| ||| Sbjct 1107 CGCCAGGGTTCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCCGG 1166 Query 34017 CGGCACGCTCTCTTTGTCC 34035 || | || ||| |||||| Sbjct 1167 GGGGATGCCCTCCTTGTCC 1185 >seq88322 Length=1192 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| |||||| ||||| ||||| ||||||||| ||||||||||| || Sbjct 80 CCTCCACGGAGCCTCAGCACGAGATGGAGCGTCGACTCCTTCTGTATGTTGTAATCGGCG 139 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| || | ||||||||||| || ||||| |||||||| || Sbjct 140 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395736454908802