Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq109320 161 1e-34 seq122528 98.7 1e-15 >seq109320 Length=8125 Score = 161 bits (178), Expect = 1e-34 Identities = 308/451 (68%), Gaps = 2/451 (0%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| |||||||||||||||||||||||||| |||||||| | || ||| |||||| Sbjct 2429 GTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCAT 2370 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349 | || || |||||| | || | | ||| ||| || | | ||| || | Sbjct 2369 CCAGTCGAACGGGTTCGTCACGTCGTACACC-TTGCCACAGCCGAGCGCGCCGAGCAGCC 2311 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | || | |||| |||| ||| ||| ||| || |||||| || | ||| | Sbjct 2310 GGTCGGCGACGAACTCGATGCACTTGCCGATCAGGTCGCTGTTCATCCCCACCAGGGCGC 2251 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | || |||||||| ||| |||| || ||| ||||| || || ||||| ||||| | | Sbjct 2250 ACGGCAGCGCGTCGCAGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACGATCCCCT 2191 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCTT 127529 | | ||| | | || | || || | | | |||| || || || Sbjct 2190 TCACACGCTCCTCGCTCGGCTTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGCGAAGTCGC 2131 Query 127530 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 127589 |||||| |||||||| ||||||||||| || ||||||||| || || |||||||| | Sbjct 2130 AGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGC 2071 Query 127590 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 127649 |||||||||| | |||||| || || || || ||| ||||||||||||||||| || | Sbjct 2070 CCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCGACGC 2011 Query 127650 ACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 | ||||| || | || ||||| || ||||| Sbjct 2010 AGGCGAAGGCCAGGAGGCGCTCCGCGAAGGA 1980 >seq122528 Length=20092 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||||||||| || |||||||| ||||| || | ||||||||| | Sbjct 11239 AACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCCT 11298 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | ||| || | | ||| | || || || || || || ||||| || || || || Sbjct 11299 CCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCAA 11358 Query 12912 GGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 || || ||| || || ||||| | || | |||||| ||||| |||||||| Sbjct 11359 GG-TGCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCCAC 11417 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030 ||||| ||||||||| | || || | ||| || ||| || ||| | ||||| || Sbjct 11418 AAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCGGC 11477 Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | || | || | ||||||||||| ||||| || Sbjct 11478 CACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGG 11513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611405930171160