Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq107102 104 2e-17 seq64485 104 2e-17 seq2978 96.9 2e-15 seq115376 87.8 1e-12 seq112091 87.8 1e-12 >seq107102 Length=7485 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| |||| ||| || || || |||| ||| ||||| || |||||||||||||| Sbjct 3728 GCCGCCGCGCAGACGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAATATTATAATCGGC 3787 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | |||| |||| ||| |||||| ||||||| | | |||||| |||| || Sbjct 3788 CAGTGTCCTCCCATCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGG 3847 Query 39612 TACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||| || || || | || || | || |||| | ||||||| |||||| Sbjct 3848 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCG--ATGGTGTCTGAACTTTCC 3905 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| ||| || || ||||| || | ||| || || || |||||||| Sbjct 3906 ACCTCCAGAGTGATGGTCTTACCGGTCAGAGTCTTGACAAAAATCTGCAT 3955 >seq64485 Length=1617 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | || |||||| ||||| || | ||| ||||| || || |||||||| || Sbjct 255 GCCTCCCCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGC 196 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | | |||| || | |||||||| ||||||| | | ||||||||||| ||| Sbjct 195 CAGAGTCCTACCATCCTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGG 136 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||| ||||| ||||| ||| || |||| | || || | ||| ||| Sbjct 135 AATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTGTCG--ATGGTATCAGAGCTCTCC 78 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| ||||| || || || | || || || ||||| ||||| Sbjct 77 ACTTCCAAAGTGATTGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 28 >seq2978 Length=2151 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| |||| ||| || || || |||| ||| ||||| || || ||||||||||| Sbjct 259 GCCGCCGCGCAGACGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAATGTTATAATCGGC 200 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | |||| |||| ||| |||||| ||||||| | | |||||| |||| || Sbjct 199 CAGTGTCCTCCCATCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGG 140 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||| || || || || || || | | | | ||||||| |||||||| Sbjct 139 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCTGAACTTTCCAC 80 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || || ||||| || | ||| || || || |||||||| Sbjct 79 CTCCAGAGTGATGGTCTTACCGGTCAGAGTCTTGACAAAAATCTGCAT 32 >seq115376 Length=10371 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||| || ||||| || | ||| || || || || |||||||||||||| || | Sbjct 6970 ACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCCAAGGTTCGGCC 6911 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| |||| || || || |||| || | | |||||| |||| || | ||||| || Sbjct 6910 ATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTT 6851 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 ||| |||||| ||| | | | |||||||| | ||||||||| || | || || Sbjct 6850 GTCCTGGATTTTTGCTTTCACATTATCGACTGTGTCCGAGCTTTCCACCTCGAGGGTGAT 6791 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || || | ||||| || ||||| ||||| Sbjct 6790 TGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 6755 >seq112091 Length=14418 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||| || ||||| || | ||| || || || || |||||||||||||| || | Sbjct 12716 ACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCCAAGGTTCGGCC 12775 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| |||| || || || |||| || | | |||||| |||| || | ||||| || Sbjct 12776 ATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTT 12835 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 ||| |||||| ||| | | | |||||||| | ||||||||| || | || || Sbjct 12836 GTCCTGGATTTTTGCTTTCACATTATCGACTGTGTCCGAGCTTTCCACCTCGAGGGTGAT 12895 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || || | ||||| || ||||| ||||| Sbjct 12896 TGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 12931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346209598408433