Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq62309 170 1e-36 seq151237 102 6e-16 seq57622 100 2e-15 seq23822 100 2e-15 seq83431 96.9 3e-14 >seq62309 Length=3049 Score = 170 bits (188), Expect = 1e-36 Identities = 606/926 (65%), Gaps = 36/926 (4%) Strand=Plus/Minus Query 517391 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 ||||||||| ||| |||||| ||| ||| ||| || || || || || | || ||| Sbjct 1146 TCACCCTCGTAAACCTGGATAAGGACTCCAGGTTGGTTGTCCGAGTAGGTGGAGAACACT 1087 Query 517451 CTGGATTTTTTACAAGGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATACC 517506 || || || || || |||||||| ||||| | ||||| | ||| Sbjct 1086 TGTTCCTTCTTGGTGGGGATAGTGGTGTTTCTTGGGATCAACACA----GTCATGACACC 1031 Query 517507 ACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT--TGA 517564 || || ||||| | ||||||||| || || |||||||| | | |||||| | || Sbjct 1030 TCCCGCAGTTTCCAGACCAAGAGAGAGGGGTGTGACATCCAGCA--ACAATAGATCCTGG 973 Query 517565 AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 517624 | || |||| | ||| | ||| || ||||||| || || ||||| || ||| Sbjct 972 ACCTTCTCATTGCCCTCGCCACTCAAAATTGCAGCTTGAACGGCTGCGCCATAAGCCACA 913 Query 517625 GCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGA 517681 ||||| ||||| || | | || || || | || || ||||| |||| || || | Sbjct 912 GCTTCGTCAGGGTTGATGCTCTTGCAG--AGCTCCTTCCCGTTGAAGAAATCCTGCAATA 855 Query 517682 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 | || ||||| || || | || || || || || | |||| || || || || Sbjct 854 -GCTGCTGCACCTTGGGGATCCTAGTGGAACCACCCACAAGGACAACATCGTGGACA-GT 797 Query 517742 GAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAA 517800 | | || |||| |||| |||| | | || ||||| || || | || | || || Sbjct 796 GCTCTTGTCCATCTTTGCATCCCTGAGACACTTCTCAACTGGCTCCATACACTTCCTGAA 737 Query 517801 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTC 517859 | ||| | || || || ||| | || | || | || | | || || || | | Sbjct 736 GAGGTCCATATTGAGCTCCTCAAATCTGGCACGGGTGATTGT-AGAGTAGAAATCCACAC 678 Query 517860 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTGCACGTT 517916 | || |||||||||||| ||| ||||| || || ||| || || || ||| | | || Sbjct 677 CCTCATACAAAGAATCAATTTCGATCGTTGTCTGGGCAGTGGAGGA-GAGAGTTCTCTTT 619 Query 517917 TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTGATTCAAATCT 517975 || | |||||| |||||||| | ||| | |||| || | | | ||| | ||| Sbjct 618 --GCCCTTTCACAAGCTGTCCTCAATCTCC-TAAGAGCCCTCGGGTTTCCATTGATATCC 562 Query 517976 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCT 518035 | || | ||||||||||| |||| |||| | | || | | ||||| || || Sbjct 561 TTCTTGTGCTTTCTCTTGAACTCTTGAACAAAGTGGTTCACCATTCTGTTATCGAAGTCC 502 Query 518036 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 518095 ||||| || | | ||||| ||| | || || | || | ||| | || ||||||| | Sbjct 501 TCACCGCCAAGATGAGTATCTCCAGCTGTTGCCTTCACCTCGAAGATACCCTCTTCAATA 442 Query 518096 GACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 518155 | | || | ||||| || |||||||| | ||||||||| | |||||| | ||| Sbjct 441 GTTAGGAGGGACACATCGAATGTACCACCACCAAGATCAAAAATCAACACATTCTTCTCT 382 Query 518156 TTGT--CT--TGGTTTT--TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 | || ||| ||| | ||||||||||| || | || ||||||||||| ||||| Sbjct 381 CCGGAGCTGGTGGCTTTCTTGTCAAGACCATAAGCGATGGCTGCAGCAGTTGGCTCATTG 322 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 ||||| | || ||||| || |||||||| || ||||| || ||||| || || || Sbjct 321 ATAATACGCATGACATTGAGGCCAGCAATGACACCGGCATCCTTGGTGGCCTGCCTCTGA 262 Query 518270 GAATCGTTAAAATATGCAGGAACAGT 518295 || || ||||| || ||||| || || Sbjct 261 GAGTCATTAAAGTAGGCAGGGACTGT 236 >seq151237 Length=1472 Score = 102 bits (112), Expect = 6e-16 Identities = 126/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 ||||||||||| | ||||||| ||| | |||| | || ||| || | |||| Sbjct 1287 GTTCCACCACCTAGGTCAAAAACAAGGATATTCTTCTCACCACCTTTCTTGTC--CAAG- 1343 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 |||||||||| ||||||||||| |||||||| |||||||| |||||| || |||||| Sbjct 1344 CCATACGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTAGCAACATTCAGTCCAGCA 1403 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||| || || || || || ||||| ||||| | ||| || || || || Sbjct 1404 ATTACACCAGCGTCCTTGGTAGCTTGCCTTTGGGCATCATTGAAGTAGGC 1453 >seq57622 Length=1978 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235 |||||| | || |||||| ||||| || ||||| || ||||| |||| ||| || || Sbjct 1878 ACCATATGAAAGAGCAGCTGCAGTGGGCTCATTGATGATTCTTTCTACATCAAGCCCTGC 1819 Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 || || || |||||||| || || ||||| || | ||| || ||||| || |||||||| Sbjct 1818 GATCCTCCCAGCATCTTTTGTTGCCTGTCTCTGAGCATCATTGAAATAGGCTGGAACAGT 1759 Query 518296 AATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACT 518355 |||||| || | | | | ||| || | |||||| || |||| | |||| || || Sbjct 1758 AATAACAGCTTTTGAAATTGATTTCCCCAAATAAGCCTCGGCAGTTTCTCTCATCTT-CT 1700 Query 518356 TAA-AATCATTGATGAAATTTGTTCTGGGGAATATTGCT 518393 || || | | |||||| ||||||||||||| Sbjct 1699 GAAGGATGAAAGCACCAATTTGACTCGGGGAATATTGCT 1661 Score = 89.7 bits (98), Expect = 4e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 322243 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 322302 ||| |||| |||||| |||||||| || ||||| || ||| | ||||| | || || Sbjct 1878 ACCATATGAAAGAGCAGCTGCAGTGGGCTCATTGATGATTCTTTCTACATCAAGCCCTGC 1819 Query 322303 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 322362 || | ||| ||| ||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct 1818 GATCCTCCCAGCATCTTTTGTTGCCTGTCTCTGAGCATCATTGAAATAGGCTGGAACAGT 1759 Query 322363 AATAACTGCTTT 322374 |||||| ||||| Sbjct 1758 AATAACAGCTTT 1747 >seq23822 Length=2595 Score = 100 bits (110), Expect = 2e-15 Identities = 231/345 (67%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 517216 AGTAATAGTAATATTCTTGGATTTGTTT---GTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||||||||| |||| |||| || ||| ||| |||||| | ||||| ||| || Sbjct 433 AGTAATAGTGATAT-CTTGC--TTCTTTCCAGTTCCTTTATCCACAGCAGTAACAGAGAG 489 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 ||| ||||||||||| | |||||| |||| |||||||||||||| |||| |||| || Sbjct 490 AATTCCATTGGCATCGATATCAAACTTGACCTCAATTTGAGGGACACCTCGAGGAGCTGG 549 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 |||||| || || | || | || ||| |||||||| || || | | || Sbjct 550 TGGGATACCGTCAAGGCGGAAGCTGCCGAGAGATTTATTATCCCTAACAAACTCCCTCTC 609 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 || | || | | || ||| ||||||| || | ||| | || ||| Sbjct 610 CCCTTGGAGGACATTAATCTCAACGCTAGTTTGACCGTCAGCTGCAGTAGAGAAAACTTC 669 Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 ||||| | || | |||||||| || ||| || |||||||| | |||||| Sbjct 670 TGATTTAGAAGTCGGGAGAGTTGTGTTCCTTGGAATGATCTTGGTCATGACACCACCCAG 729 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| || ||||||||||| || || || ||||| | || ||||| Sbjct 730 TGTCTCCAAACCAAGAGATAGTGGTGTCACATCTAAAAGAACAAT 774 >seq83431 Length=17027 Score = 96.9 bits (106), Expect = 3e-14 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || |||| |||||||| | | |||||||| |||||||||||||| | | || Sbjct 957 TTCTTTTCAAACCCATACGCCAGCGATGCAGCAGTAGGTTCATTAATAATGCGAAGCACT 1016 Query 518225 T-TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 | |||| |||||||| | ||| |||||||| || || |||||||| || || || || Sbjct 1017 TCTAAG-CCAGCAATACGTCCAGCATCTTTTGTTGCGGTCCTTTGTGAGTCATTGAAGTA 1075 Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTACTT 518315 ||||||||||| | || || | |||||||| Sbjct 1076 AGCAGGAACAGTGACCACTGCTTTAGTTACTT 1107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3767225567820706