Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq109320 136 5e-27 seq122528 109 7e-19 seq95628 109 7e-19 seq13693 82.4 9e-11 >seq109320 Length=8125 Score = 136 bits (150), Expect = 5e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| | || || || || || ||||| ||||||||||| || | Sbjct 1980 TCCTTCGCGGAGCGCCTCCTGGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGCAGC 2039 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||||||||||| || |||||||| || ||| |||||| ||| Sbjct 2040 TTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTCTCGAAC 2099 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||||| || |||||||| |||||| Sbjct 2100 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 2129 >seq122528 Length=20092 Score = 109 bits (120), Expect = 7e-19 Identities = 270/408 (66%), Gaps = 4/408 (1%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| || |||||||| || | ||||||||| || Sbjct 11238 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 11297 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | |||||| | | ||| | ||||| ||||| ||||||||||| || || ||||| Sbjct 11298 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCA 11357 Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 ||| ||||| || || ||||| | |||| || | | || || ||||| Sbjct 11358 AGGT--GCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCC 11415 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211 ||||||| ||||||||| | | || | ||| || ||| || || || ||||| Sbjct 11416 ACAAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCG 11475 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 || | || | || | ||| ||||| || || || || || | || || |||| Sbjct 11476 GCCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGGAGGGCCGACAAGAAGACAACCT 11535 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 || || || || || | ||| | ||||| | ||| | ||||| || | | Sbjct 11536 TTGGGGATTTTAGCCCCCAAAGCGGTGTACTTATCAGGGTTCTTCAAGAAATCAACCACC 11595 Query 16332 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAAC 16379 |||| |||||| |||||| ||| ||| | ||||||| |||| Sbjct 11596 TCTTGCAATTCCAATTTGGCTTGATCAGCCCCAGCTACATCGGCAAAC 11643 >seq95628 Length=10288 Score = 109 bits (120), Expect = 7e-19 Identities = 309/464 (67%), Gaps = 18/464 (4%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT--TTCGTTATCAA 15975 ||||| || || | || || ||||| || | |||| |||||||| ||| || ||| Sbjct 6403 TCAAGAATGTCTGCACGGTTAGTTGCTGCAACAACAATGATACCTGTATTTCCTT--CAA 6460 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 |||||||||| |||||||| ||||| |||| || || |||| ||||||||| || | Sbjct 6461 AACCATCCATTTCTGTCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CC 6518 Query 16036 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | | | |||| | | ||| ||||| |||||||| ||||||| || || ||||| Sbjct 6519 TCCAATTCCAGTTCCTCTCTGCCGGCCCACAGCATCAATTTCATCAACAAACACAATGCA 6578 Query 16094 TGGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 || ||| || | | ||| ||| ||||| || || | || || ||||||| Sbjct 6579 GGGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCGCGAACTCTAGAAGCACCAACACCAA 6637 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 16211 | |||||||| || || | | | ||| || | || || || ||| | |||||| Sbjct 6638 CGAACATCTCTACGAACTCAGAACCTGAA-ATGGAGAAAAATGGAACACCTGCTTCACCA 6696 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 ||||| || || || || || || || || ||||| ||| | || ||| |||| Sbjct 6697 GCAATTGCCTTTGCAAGCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCC 6756 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 || || || ||| || || | |||||||||| || ||||| ||||| | Sbjct 6757 TTAGGGATACGAGCCCCAATTGCAGTAAACCTCTCAGGTTTTTTTAGAAACTCCAC---C 6813 Query 16332 TCTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 ||||| || || | ||||| | |||| || ||||||| Sbjct 6814 ACTTCCATGAAGTCCTGCTTGGCCTCATCAACACCAGCAACATC 6857 >seq13693 Length=9404 Score = 82.4 bits (90), Expect = 9e-11 Identities = 193/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| | ||||| | ||| | || ||||||||| || |||||||| || || Sbjct 619 ATCAAACCTTCCTGGCCTAAGCAAGGCAGAATCAAGGATTTCGGGACGATTCGTCGCTGC 678 Query 15947 GATGACAA-CAATAC-CTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 |||||| | || | | ||||| | | | |||| |||||||| || | | ||| || Sbjct 679 GATGACGATCACTCCACTGTTCCC--ACTATAACCGTCCATCTCAGTGAGCAACTGATTC 736 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 | ||||| || | || ||||| || | | | | |||| | | ||| | || | Sbjct 737 AGTGTTTGCTCTCTCTCGTCATTTCCT--CCTCCGATGCCAGTTCCTCTCTGCCTCCCAA 794 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAA 16120 | ||||||||||||||||||||||| | ||| || || ||||| || || | ||| Sbjct 795 CAGCATCAATCTCATCAATGAAGACCAAGCAAGG-CGA-ATTCGCCTTCGCCTTGTTAAA 852 Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTC 16162 || || || || | | ||||| ||||| ||||||||||| Sbjct 853 CAGGTCTCGCACCCTCAAAGCGCCTACACCGACAAACATCTC 894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618616349520720