Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq95628 123 3e-23 seq109320 118 1e-21 seq122528 96.9 4e-15 seq13693 84.2 3e-11 >seq95628 Length=10288 Score = 123 bits (136), Expect = 3e-23 Identities = 310/463 (67%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAA 9282 ||||| || || | || || || || || | |||| |||||||| ||| || ||| Sbjct 6403 TCAAGAATGTCTGCACGGTTAGTTGCTGCAACAACAATGATACCTGTATTTCCTT--CAA 6460 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 |||||||||| |||||||| || || |||| || || |||| ||||||||| || | Sbjct 6461 AACCATCCATTTCTGTCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CC 6518 Query 9343 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | | |||| | | ||| ||||| |||||||| ||||||| || ||||| || Sbjct 6519 TCCAATTCCAGTTCCTCTCTGCCGGCCCACAGCATCAATTTCATCAACAAACACAATGCA 6578 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || ||| || ||| | | || ||||||||||| || || || |||||||| Sbjct 6579 GGGAGCATTCTCTTTGGCCTTCTTGAAAAGATCGCGAACTCTAGAAGCACCAACACCAAC 6638 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 |||||||| || || | | | ||| || | || || || ||| | |||||| | Sbjct 6639 GAACATCTCTACGAACTCAGAACCTGAA-ATGGAGAAAAATGGAACACCTGCTTCACCAG 6697 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 |||| || || || || || || || || ||||| ||| | || ||| ||||| Sbjct 6698 CAATTGCCTTTGCAAGCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCT 6757 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 || || || ||| || || | |||||||||| || ||||| ||||| | Sbjct 6758 TAGGGATACGAGCCCCAATTGCAGTAAACCTCTCAGGTTTTTTTAGAAACTCCAC---CA 6814 Query 9640 CTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 ||||| || || | ||||| | |||| || ||||||| Sbjct 6815 CTTCCATGAAGTCCTGCTTGGCCTCATCAACACCAGCAACATC 6857 >seq109320 Length=8125 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 2129 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCC 2070 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||| | ||| | || |||||||| |||||||||||||| ||||| || || Sbjct 2069 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCGACGCA 2010 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 || || || | |||||||| |||||||| Sbjct 2009 GGCGAAGGCCAGGAGGCGCTCCGCGAAGGA 1980 >seq122528 Length=20092 Score = 96.9 bits (106), Expect = 4e-15 Identities = 189/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || || |||||||| || | ||||||||| || Sbjct 11238 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 11297 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | |||||| | | ||| | ||||| ||||| ||||||||||| || ||||| || Sbjct 11298 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCA 11357 Query 9401 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || || ||| | || | ||||| | || | ||| || || || ||||| | Sbjct 11358 AGG-TGCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCCA 11416 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| ||||||||| | | || | ||| || ||| || || || ||||| | Sbjct 11417 CAAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCGG 11476 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | | || | || | ||| ||||| || || || || Sbjct 11477 CCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGG 11513 >seq13693 Length=9404 Score = 84.2 bits (92), Expect = 3e-11 Identities = 191/281 (68%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | ||||| | ||| | || ||||||||| || ||||||||||| || Sbjct 619 ATCAAACCTTCCTGGCCTAAGCAAGGCAGAATCAAGGATTTCGGGACGATTCGTCGCTGC 678 Query 9254 GATGACAA-CAATAC-CTGTTTC-ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 |||||| | || | | ||||| | | ||| |||| |||||||| || | | || || Sbjct 679 GATGACGATCACTCCACTGTTCCCACTAT---AACCGTCCATCTCAGTGAGCAACTGATT 735 Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCC 9368 | ||||| || | || ||||| || | | | | |||| | | ||| | || Sbjct 736 CAGTGTTTGCTCTCTCTCGTCATTTCCT--CCTCCGATGCCAGTTCCTCTCTGCCTCCCA 793 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||||||||||||||||||||| | || || ||| | || | | ||| Sbjct 794 ACAGCATCAATCTCATCAATGAAGACCAAGCAAGGCGAATTCGCCTTCGCCTTGTTAAAC 853 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTC 9469 || || || ||||| ||||| ||||| ||||||||||| Sbjct 854 AGGTCTCGCACCCTCAAAGCGCCTACACCGACAAACATCTC 894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587960108385240