Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq32040 168 8e-37 seq243164 125 8e-24 seq4239 105 8e-18 seq48412 93.3 5e-14 seq72959 89.7 6e-13 seq4237 87.8 2e-12 seq79347 86.0 7e-12 >seq32040 Length=2773 Score = 168 bits (186), Expect = 8e-37 Identities = 203/276 (74%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 168749 GATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGA 168808 ||||| |||||||| || || |||||||| || | | | | |||||| || | || Sbjct 2262 GATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGT 2321 Query 168809 ATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGG 168868 | || ||||||||| | |||||||||| | | | || |||||| | |||||| Sbjct 2322 GTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTTGG 2381 Query 168869 ATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCA 168928 || |||||| |||||||| || || | || || ||| || ||| | | |||||| Sbjct 2382 ATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCA 2441 Query 168929 TTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTC 168988 ||||||| | ||| | ||||||||||||||||||||||||| || ||||||||| Sbjct 2442 ATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTC 2501 Query 168989 ATGTTCGTATTCCAAGCAGAGCACAACATTCTTATG 169024 ||| | |||||||| || ||||||||||| |||||| Sbjct 2502 ATGATTGTATTCCAGGCTGAGCACAACATCCTTATG 2537 >seq243164 Length=1121 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 169277 CCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAAC 169336 || || ||| || | ||||| || || | |||||| | || ||||| |||||| | || Sbjct 1105 CCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAAT 1046 Query 169337 GGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGT 169396 || || || || |||||||| || || ||| | | ||| | ||| ||| |||| | Sbjct 1045 GGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCT 986 Query 169397 GACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAAC 169456 || | |||| | || ||||||||||||||||| |||||||| ||||| ||||| ||| Sbjct 985 GATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 926 Query 169457 TTCCCACTAGACTTAGC 169473 ||||| |||||| |||| Sbjct 925 TTCCCTCTAGACCTAGC 909 >seq4239 Length=6188 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 169169 GAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTAT 169228 |||||||| |||||||| | || || ||||| || || || |||| ||||||| ||| Sbjct 1216 GAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCCATAT 1275 Query 169229 GCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGT 169288 || ||||||||||| || | | | |||||||||||||| | | || || ||| || Sbjct 1276 GCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 1335 Query 169289 GTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTT 169348 | | ||| || || | |||||| | | |||| |||||| | || || || || || Sbjct 1336 ATCTAGTTCACTACTTTAGGTATCGGCATTGTGGCTTTCAACCTAAATGGTTTCAATTTC 1395 Query 169349 AACCAATCAGT 169359 |||||||| || Sbjct 1396 AACCAATCCGT 1406 >seq48412 Length=5542 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 168964 AGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTAT 169023 |||||| ||| || ||||| |||||| | ||| |||| || ||||||||||| ||||| Sbjct 2083 AGGAATCCGTGGTACTTTCAATTTCATGATTGTACTCCAGGCTGAGCACAACATCCTTAT 2024 Query 169024 GCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAAT 169083 ||| || || || ||| ||| |||| ||| | ||||| || | |||||| || || Sbjct 2023 GCACCCATTTCACATGTTAGGCATAGCTGGTGTATTCGGCGGCTTCCTATTCAGTGCTAT 1964 Query 169084 GCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGAC 169122 | ||||||| | |||| ||| | | || ||||| || Sbjct 1963 GTATGGTTCCTTGGTAATCTCTAGTTTGATGAGAGAAAC 1925 >seq72959 Length=7288 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 169193 GCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGT 169252 || ||||| || || || |||| |||||||| ||||| ||||||||||| || | | Sbjct 818 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 759 Query 169253 CTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATC 169312 | || |||||||||| | | || || ||| || | || || || || | |||||| Sbjct 758 TTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGATTCACTGCTTTAGGTATC 699 Query 169313 TGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATC 169356 | || ||||| |||||| | || || || || || |||||||| Sbjct 698 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 655 >seq4237 Length=12380 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 169169 GAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTAT 169228 |||||||| |||||||| | || || | ||| || || || |||| |||||||| ||| Sbjct 9152 GAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTTCCAATAT 9211 Query 169229 GCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGT 169288 || ||||||||||| || | | | |||||||||||||| | | || ||| || Sbjct 9212 GCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTGTAGTAGGT 9271 Query 169289 GTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTT 169348 | | ||| || || | |||||| | ||||| || ||| | || || || || || Sbjct 9272 ATCTAGTTCACTGCTTTAGGTATCAACATTATGGCTTTTAACCTAAATGGTTTCAATTTC 9331 Query 169349 AACCAATCAGT 169359 || ||||| || Sbjct 9332 AATCAATCCGT 9342 >seq79347 Length=11633 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 ||||| | ||||||||||| |||||||| |||||||| || || || ||||| || || Sbjct 649 GGTTATAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 708 Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAA 169239 || |||| || ||||| ||||| |||||||| Sbjct 709 GGCCGATTGATTTTCCAATATGCTAGTTTCAA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562508380464480