Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq32040 125 1e-23 seq243164 113 7e-20 seq48412 113 7e-20 seq4239 104 3e-17 seq4237 95.1 2e-14 seq72959 91.5 2e-13 >seq32040 Length=2773 Score = 125 bits (138), Expect = 1e-23 Identities = 197/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 215549 GTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATT 215608 ||||| |||||| | ||||| || || |||| | || || | | |||||| | || Sbjct 2259 GTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTT 2318 Query 215609 GGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCT 215668 ||| | || ||| || | |||||||| || || | | | |||||| | ||| Sbjct 2319 GGTGTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCCCT 2378 Query 215669 TGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTAT 215728 ||||| |||||| || || || ||||| | ||||| ||| || ||| | | || Sbjct 2379 TGGATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAC 2438 Query 215729 CCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAAC 215788 ||| | ||||| | ||| | ||| |||||| || ||||| ||||| || |||||| Sbjct 2439 CCAATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAAC 2498 Query 215789 TACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCAC 215830 | |||| |||| |||||||||||||||||||| || ||| || Sbjct 2499 TTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGTAC 2540 >seq243164 Length=1121 Score = 113 bits (124), Expect = 7e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 216090 GTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACT 216149 |||||||| ||||| | ||| || |||||||| |||||||| || |||||||| | Sbjct 1095 GTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATT 1036 Query 216150 TCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTA 216209 ||||||| || || || || ||| || ||| ||| ||||| || || ||| Sbjct 1035 TCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTA 976 Query 216210 ACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAG 216269 | | || |||||||||||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 975 ATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAG 916 Query 216270 ACTTGGCTGCTG 216281 || | ||||||| Sbjct 915 ACCTAGCTGCTG 904 >seq48412 Length=5542 Score = 113 bits (124), Expect = 7e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 215768 GGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATG 215827 |||||| ||| || ||||| | |||| |||| ||||||||||||||||||| || ||| Sbjct 2082 GGAATCCGTGGTACTTTCAATTTCATGATTGTACTCCAGGCTGAGCACAACATCCTTATG 2023 Query 215828 CACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATG 215887 |||||||| ||||||||||| | |||||||| ||||| || | | ||| ||| ||| Sbjct 2022 CACCCATTTCACATGTTAGGCATAGCTGGTGTATTCGGCGGCTTCCTATTCAGTGCTATG 1963 Query 215888 CACGGTTCACTTGTTACATCT 215908 | ||||| |||| || |||| Sbjct 1962 TATGGTTC-CTTGGTA-ATCT 1944 >seq4239 Length=6188 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 215971 GGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATA 216030 ||| ||||| || || ||| ||||||| || ||||| ||||| || | ||||||| ||| Sbjct 1215 GGAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCCATA 1274 Query 216031 CGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTG 216090 || ||||||||| || | | | ||||||||||| || || | ||||| | | Sbjct 1275 TGCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGG 1334 Query 216091 TATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTT 216150 ||||| | ||| | | ||| || | | |||| |||||||| || |||||||| || Sbjct 1335 TATCTAGTTCACTACTTTAGGTATCGGCATTGTGGCTTTCAACCTAAATGGTTTCAATTT 1394 Query 216151 CAACCAGTCTGT 216162 |||||| || || Sbjct 1395 CAACCAATCCGT 1406 >seq4237 Length=12380 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 215971 GGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATA 216030 ||| ||||| || || ||| ||||||| | ||||| ||||| || | ||||||||||| Sbjct 9151 GGAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTTCCAATA 9210 Query 216031 CGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTG 216090 || ||||||||| || | | | ||||||||||| || | | | ||| | | Sbjct 9211 TGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTGTAGTAGG 9270 Query 216091 TATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTT 216150 ||||| | ||||| | ||| || | |||||| || ||||| || |||||||| || Sbjct 9271 TATCTAGTTCACTGCTTTAGGTATCAACATTATGGCTTTTAACCTAAATGGTTTCAATTT 9330 Query 216151 CAACCAGTCTGT 216162 ||| || || || Sbjct 9331 CAATCAATCCGT 9342 >seq72959 Length=7288 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 215995 TGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAG 216054 ||| || ||||| ||||| || | ||||||||||| || ||||||||| || | Sbjct 819 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 760 Query 216055 TCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGT 216114 | | || |||||||| | || | ||||| | ||||||| ||||| | ||| | Sbjct 759 TTTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGATTCACTGCTTTAGGTAT 700 Query 216115 CTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTC 216159 | |||||||| |||||||| || |||||||| |||||||| || Sbjct 699 CAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742529686206480