Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq32040 156 5e-33 seq243164 131 2e-25 seq4239 123 3e-23 seq4237 123 3e-23 seq72959 120 4e-22 seq48412 87.8 2e-12 >seq32040 Length=2773 Score = 156 bits (172), Expect = 5e-33 Identities = 202/279 (72%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 169948 GATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGA 170007 ||||| ||||| || ||||| ||||||||| | || || | | |||||| | | || Sbjct 2262 GATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGT 2321 Query 170008 ATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGG 170067 | || ||||||||| | |||||||| | | |||| | |||||||| |||||| Sbjct 2322 GTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTTGG 2381 Query 170068 ATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCT 170127 || ||| |||||||| ||||| || |||| || ||||| ||||| | || || Sbjct 2382 ATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCA 2441 Query 170128 TTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTC 170187 | ||||| || ||| | | || ||||||||||| || || ||||| || |||||| Sbjct 2442 ATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTC 2501 Query 170188 ATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAC 170226 ||| | |||||||| || ||||||||||| |||||| || Sbjct 2502 ATGATTGTATTCCAGGCTGAGCACAACATCCTTATGTAC 2540 >seq243164 Length=1121 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 170476 CCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAAT 170535 ||||||||| | |||||||| ||| | | ||||| |||| ||||| || ||||| ||| Sbjct 1105 CCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAAT 1046 Query 170536 GGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCA 170595 || || || |||||||| || | || ||| | ||| ||| || ||| ||||| Sbjct 1045 GGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCT 986 Query 170596 GACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAAC 170655 || || |||| | || ||||| ||||||||||| |||||||| |||||||| || ||| Sbjct 985 GATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 926 Query 170656 TTCCCACTTGAC 170667 ||||| || ||| Sbjct 925 TTCCCTCTAGAC 914 >seq4239 Length=6188 Score = 123 bits (136), Expect = 3e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 170368 GAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATAT 170427 |||||||| || || || | || || ||||| || ||||| || | ||||||| |||| Sbjct 1216 GAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCCATAT 1275 Query 170428 GCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGC 170487 ||||| || |||||| |||| | | ||||||||||| ||| | | ||||||||| | Sbjct 1276 GCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 1335 Query 170488 ATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTC 170547 |||| ||| ||| | | ||||| ||| |||| || ||||| ||||| || || ||| Sbjct 1336 ATCTAGTTCACTACTTTAGGTATCGGCATTGTGGCTTTCAACCTAAATGGTTTCAATTTC 1395 Query 170548 AACCAGTC 170555 ||||| || Sbjct 1396 AACCAATC 1403 >seq4237 Length=12380 Score = 123 bits (136), Expect = 3e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 170368 GAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATAT 170427 |||||||| || || || | || || | ||| || ||||| || | |||||||||||| Sbjct 9152 GAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTTCCAATAT 9211 Query 170428 GCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGC 170487 ||||| || |||||| |||| | | ||||||||||| ||||| | | ||||||| | Sbjct 9212 GCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTGTAGTAGGT 9271 Query 170488 ATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTC 170547 |||| ||| ||| | | ||||| || ||||| |||||||| ||||| || || ||| Sbjct 9272 ATCTAGTTCACTGCTTTAGGTATCAACATTATGGCTTTTAACCTAAATGGTTTCAATTTC 9331 Query 170548 AACCAGTC 170555 || || || Sbjct 9332 AATCAATC 9339 >seq72959 Length=7288 Score = 120 bits (132), Expect = 4e-22 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 170392 GCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGT 170451 || ||||| || ||||| || | ||||||||||||||||| || |||||| |||| | Sbjct 818 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 759 Query 170452 CTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATT 170511 | || |||||||| | | | | ||||||||| | ||||| || ||| | | ||||| Sbjct 758 TTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGATTCACTGCTTTAGGTATC 699 Query 170512 TGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGAT 170565 |||| ||||| || ||||| ||||| || || |||||||| || || || ||| Sbjct 698 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCATAGTTGAT 645 >seq48412 Length=5542 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 170173 GGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTC 170232 ||||| || || |||||| | ||| |||| || ||||||||||| |||||||||||||| Sbjct 2073 GGTACTTTCAATTTCATGATTGTACTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 2014 Query 170233 CATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCA 170292 || ||| ||| | |||||| | ||||| || || ||| || ||| | ||||| Sbjct 2013 CACATGTTAGGCATAGCTGGTGTATTCGGCGGCTTCCTATTCAGTGCTATGTATGGTTCC 1954 Query 170293 CTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGA 170333 | |||| ||| | | || ||||| || | ||| || || Sbjct 1953 TTGGTAATCTCTAGTTTGATGAGAGAAACCATAGAAAATGA 1913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580851738314400