Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq32040 168 8e-37 seq243164 143 3e-29 seq4237 125 8e-24 seq48412 113 5e-20 seq4239 113 5e-20 >seq32040 Length=2773 Score = 168 bits (186), Expect = 8e-37 Identities = 203/276 (74%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 84422 CATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACC 84481 |||||||||||| || || |||||||| |||| |||| ||||||| || || || || || Sbjct 2537 CATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCC 2478 Query 84482 AAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGA 84541 || ||||| |||| | ||| | ||| || | || || | | ||| ||||||| Sbjct 2477 TAGAGGCATACCATTCAAAAAACTTCTTTGACCAATTGGGTAGATCAAGAAAACAGCAGT 2418 Query 84542 TGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATA 84601 || |||||||| ||||| || || |||||| ||||| || |||||||| ||||| | Sbjct 2417 AGCAGCTGCAACAGGAGCTGAATATGCAACATCAATCCAAGGGCGCATACCCAGACGGAA 2358 Query 84602 TGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAAC 84661 || |||||| ||||||||||||||| | | |||||| | |||||| | |||| Sbjct 2357 ACTAAATTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAAT 2298 Query 84662 AAGTTGATAAGGTCCACCATTATATAGCCATTCGTC 84697 || | |||||| || || || |||| |||||| || Sbjct 2297 TAGCTCATAAGGACCGCCGTTGTATAACCATTCATC 2262 >seq243164 Length=1121 Score = 143 bits (158), Expect = 3e-29 Identities = 148/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| |||||||||| Sbjct 921 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTAATA 980 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | ||||| ||| ||||| || | || ||||| || Sbjct 981 ATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTG 1040 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || || Sbjct 1041 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 1100 Query 84165 ACTGGCCAAGCAGC 84178 || ||||||||||| Sbjct 1101 ACAGGCCAAGCAGC 1114 >seq4237 Length=12380 Score = 125 bits (138), Expect = 8e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 84066 ACACGGTTTTGGCTATCGA-CAAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGC 84124 ||||| | ||| ||||| | || | | |||||||| || || ||||| || ||||| || Sbjct 9363 ACACGATCTTGACTATCAATCACGGAT-TGATTGAAATTGAAACCATTTAGGTTAAAAGC 9305 Query 84125 CATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAA 84184 ||| || | | ||| | ||||| ||| | || || || || |||||| ||| | ||| Sbjct 9304 CATAATGTTGATACCTAAAGCAGTGAACTAGATACCTACTACAAGCCAAGTAGCTAGGAA 9245 Query 84185 AAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTA 84244 ||||| | ||||||| ||||||||| |||||| |||||||| | || || || || Sbjct 9244 GAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATA 9185 Query 84245 GCCGTGAGCAGCAACAATATTATAAGTTTCCTC 84277 || ||||||| | |||||||||||||| || Sbjct 9184 ACCAGGAGCAGCTATGATATTATAAGTTTCTTC 9152 >seq48412 Length=5542 Score = 113 bits (124), Expect = 5e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 84313 CATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGA 84372 |||||||| | ||||||| || | | ||| | || | ||||||| ||| ||| || Sbjct 1914 CATTTTCTATGGTTTCTCTCATCAAACTAGAGATTACCAAGGAACCATACATAGCACTGA 1973 Query 84373 ATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGT 84432 |||| || |||||||||||||| | || ||||||||||| || ||||||||||||| Sbjct 1974 ATAGGAAGCCGCCGAATACACCAGCTATGCCTAACATGTGAAATGGGTGCATAAGGATGT 2033 Query 84433 TATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCC 84472 | || || ||||||| |||| |||| | ||||| || || Sbjct 2034 TGTGCTCAGCCTGGAGTACAATCATGAAATTGAAAGTACC 2073 >seq4239 Length=6188 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || ||||| || || ||||| || || || |||| ||| | ||| | || || ||| Sbjct 1400 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCACAATGCCGATACCTAAAGTAGTGAAC 1341 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAG 84212 | || || || || ||||||||||| | ||| ||||| | ||||||| ||||||||| Sbjct 1340 TAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACGAGAATTGTTGAAA 1281 Query 84213 GAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTT 84272 |||||| ||||||| | || || || || || |||||||| | |||||||||||| Sbjct 1280 CTAGCATATGGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTATGATATTATAAGTT 1221 Query 84273 TCCTC 84277 || || Sbjct 1220 TCTTC 1216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569316980779080