Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq243164 147 6e-31 seq32040 116 1e-21 seq4239 114 4e-21 seq4237 111 5e-20 seq72959 109 2e-19 >seq243164 Length=1121 Score = 147 bits (162), Expect = 6e-31 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 26574 TTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGG 26633 |||| ||| ||||||| || || || || ||| | || || | |||||| |||| |||| Sbjct 1119 TTCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGG 1060 Query 26634 CATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAA 26693 | || |||||||||||||| || || ||||| || ||||| ||| | | || ||| Sbjct 1059 CTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAA 1000 Query 26694 TACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGC 26753 | ||| ||||||||| | | || || |||||||| || | ||||||||||| || | Sbjct 999 TTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAAC 940 Query 26754 GTAATGCTCATAACTTTCCACTTGACTTAGC 26784 |||||||||||||||| || || ||| |||| Sbjct 939 GTAATGCTCATAACTTCCCTCTAGACCTAGC 909 >seq32040 Length=2773 Score = 116 bits (128), Expect = 1e-21 Identities = 193/279 (69%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 26060 GACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGA 26119 || || ||| ||||||| ||||| || ||| | || ||| | | ||||||||| | || Sbjct 2262 GATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGT 2321 Query 26120 GTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGG 26179 ||||| || || | |||||||| | || | | || || ||| | || ||| Sbjct 2322 GTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTTGG 2381 Query 26180 ATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCT 26239 || |||||||||| |||| || | | || ||| || || ||||| | || || Sbjct 2382 ATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCA 2441 Query 26240 TTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTT 26299 | || ||| | |||||| |||| |||||||| || || ||||||||||| ||||| Sbjct 2442 ATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTC 2501 Query 26300 ATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 ||| | |||||||| || || || || || || ||| || Sbjct 2502 ATGATTGTATTCCAGGCTGAGCACAACATCCTTATGTAC 2540 >seq4239 Length=6188 Score = 114 bits (126), Expect = 4e-21 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26480 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTAT 26539 ||||| || |||||||| | ||||| || || || ||||| |||| || || | ||| Sbjct 1216 GAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCCATAT 1275 Query 26540 GCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGC 26599 || ||||| || || |||||| | || ||||| || ||| ||||||| || || || Sbjct 1276 GCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 1335 Query 26600 ATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTT 26659 || | | | || || | |||||| ||| |||| || |||||||||||||| || || Sbjct 1336 ATCTAGTTCACTACTTTAGGTATCGGCATTGTGGCTTTCAACCTAAATGGTTTCAATTTC 1395 Query 26660 AACCAGTCAGTAGTAGAT 26677 ||||| || ||| | ||| Sbjct 1396 AACCAATCCGTAATTGAT 1413 >seq4237 Length=12380 Score = 111 bits (122), Expect = 5e-20 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 26480 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTAT 26539 ||||| || |||||||| | ||||| | || || ||||| |||| || || || ||| Sbjct 9152 GAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTTCCAATAT 9211 Query 26540 GCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGC 26599 || ||||| || || |||||| | || ||||| || |||||||||| || || || Sbjct 9212 GCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTGTAGTAGGT 9271 Query 26600 ATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTT 26659 || | | | || || | |||||| || ||||| ||||||||||||||||| || || Sbjct 9272 ATCTAGTTCACTGCTTTAGGTATCAACATTATGGCTTTTAACCTAAATGGTTTCAATTTC 9331 Query 26660 AACCAGTCAGT 26670 || || || || Sbjct 9332 AATCAATCCGT 9342 >seq72959 Length=7288 Score = 109 bits (120), Expect = 2e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 26503 TGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTC 26562 ||| || || || ||||| |||| || || || ||||| ||||| || || ||||| Sbjct 819 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 760 Query 26563 TCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTAT 26622 | | |||||||| || | | ||||||| || || || || || | || || | ||||| Sbjct 759 TTTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGATTCACTGCTTTAGGTAT 700 Query 26623 CTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 | |||| ||||| || |||||||||||||| || || ||||| || |||| ||| Sbjct 699 CAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCATAGTTGAT 645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146248987233624