Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq32040 183 9e-42 seq243164 122 3e-23 seq4237 100 9e-17 seq72959 98.7 3e-16 seq4239 87.8 5e-13 >seq32040 Length=2773 Score = 183 bits (202), Expect = 9e-42 Identities = 206/276 (75%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 36422 CATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACC 36481 ||||||||| ||||| || ||||| || |||| ||| || |||||||| || ||||| || Sbjct 2537 CATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCC 2478 Query 36482 AAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAA 36541 ||||||||||||| | ||||| | ||| |||| ||||||| ||||| |||||| Sbjct 2477 TAGAGGCATACCATTCAAAAAACTTCTTTGACCAATTGGGTAGATCAAGAAAACAGCAGT 2418 Query 36542 TGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATA 36601 || ||||||||||| |||||||| || ||| ||||| || | |||||| || | | Sbjct 2417 AGCAGCTGCAACAGGAGCTGAATATGCAACATCAATCCAAGGGCGCATACCCAGACGGAA 2358 Query 36602 ACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAAT 36661 ||||| |||||| | || |||| |||| | | ||||| | ||||| | ||||| Sbjct 2357 ACTAAATTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAAT 2298 Query 36662 GAGTTGATATGGTCCTCCGTTATATAACCACTCGTC 36697 || | ||| || || ||||| |||||||| || || Sbjct 2297 TAGCTCATAAGGACCGCCGTTGTATAACCATTCATC 2262 >seq243164 Length=1121 Score = 122 bits (134), Expect = 3e-23 Identities = 159/219 (73%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 |||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 904 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 963 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 || ||||| |||| ||| |||||||| || | || | || | |||||| | Sbjct 964 GGTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 1023 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 | || || ||||| || || || || || || |||||||||||| || || | ||| | Sbjct 1024 CGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAG 1083 Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGA 36186 | | ||| || | || ||||||||||| | ||||| Sbjct 1084 TGAACCAGATACCTACTACAGGCCAAGCAGCTA-GAAGA 1121 >seq4237 Length=12380 Score = 100 bits (110), Expect = 9e-17 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 ||||| || || |||||||| || || || || || |||||||||||| || || || Sbjct 9349 ATCAATCACGGATTGATTGAAATTGAAACCATTTAGGTTAAAAGCCATAATGTTGATACC 9290 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| || | | | || | || |||||| ||| |||||||| |||||| || Sbjct 9289 TAAAGCAGTGAACTAGATACCTACTACAAGCCAAGTAGCTAGGAAGAAGTGTAAAGAACG 9230 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 ||| || || |||||||| |||||||| | || ||||| || ||| |||| || | Sbjct 9229 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCAGGAGCAGCTAT 9170 Query 36260 AATGTTATACGTCTCTTC 36277 || ||||| || ||||| Sbjct 9169 GATATTATAAGTTTCTTC 9152 >seq72959 Length=7288 Score = 98.7 bits (108), Expect = 3e-16 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| | || || ||||| || || || || || || |||||||||||| || || Sbjct 645 ATCAACTATGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 704 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| || | || || | || ||||||||| | ||||||||||||||| || Sbjct 705 TAAAGCAGTGAATCAGATACCTACTACAGGCCAAGCAACTAGGAAGAAATGTAAAGAACG 764 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGC 36253 ||| || || |||||||| |||||||| | || ||||| || |||||||| Sbjct 765 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGC 818 >seq4239 Length=6188 Score = 87.8 bits (96), Expect = 5e-13 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 ||||| || || || ||||| || || || || || || ||||||| | || || || Sbjct 1413 ATCAATTACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCACAATGCCGATACC 1354 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | || || | | | || | || ||||||||||| |||||||| || ||| || Sbjct 1353 TAAAGTAGTGAACTAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACG 1294 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 ||| || || |||||||| ||||||| | || ||||| || |||||||| || | Sbjct 1293 AGAATTGTTGAAACTAGCATATGGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAT 1234 Query 36260 AATGTTATACGTCTCTTC 36277 || ||||| || ||||| Sbjct 1233 GATATTATAAGTTTCTTC 1216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149964857209354