Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq32040 159 1e-34 seq4237 127 6e-25 seq243164 125 2e-24 seq72959 109 2e-19 seq152958 102 2e-17 seq48412 89.7 2e-13 seq79347 86.0 2e-12 >seq32040 Length=2773 Score = 159 bits (176), Expect = 1e-34 Identities = 203/277 (73%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 5644 CATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACC 5703 ||||||||| ||||| || ||||||||||| | ||| ||||| ||||||||||| || || Sbjct 2537 CATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCC 2478 Query 5704 AAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGT 5762 ||||||||||||| ||||||| || || | ||||| | || || || | ||| Sbjct 2477 TAGAGGCATACCATTCAAAAAACTTCTTTGACCAATTGGGTAGATCAAGAAAACAGCAGT 2418 Query 5763 AGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGT 5822 || | || ||||| || ||||||||||| || |||||| || ||||| || | | | Sbjct 2417 AG-CAGCTGCAACAGGAGCTGAATATGCAACATCAATCCAAGGGCGCATACCCAGACGGA 2359 Query 5823 AACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGA 5882 |||||| |||||| | || |||| |||| || | ||||| | |||||| | || | Sbjct 2358 AACTAAATTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 2299 Query 5883 CGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATC 5919 || | || || || || ||||| | ||||||||| Sbjct 2298 TTAGCTCATAAGGACCGCCGTTGTATAACCATTCATC 2262 >seq4237 Length=12380 Score = 127 bits (140), Expect = 6e-25 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362 |||| || || |||||||| || || || || || |||||||||||| || ||| || Sbjct 9348 TCAATCACGGATTGATTGAAATTGAAACCATTTAGGTTAAAAGCCATAATGTTGATACCT 9289 Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422 | || || | | | || | || || |||||||||| |||||||| |||||| ||| Sbjct 9288 AAAGCAGTGAACTAGATACCTACTACAAGCCAAGTAGCTAGGAAGAAGTGTAAAGAACGA 9229 Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACA 5482 |||||| || |||||||| |||||||| | || ||||| || ||| |||| || | Sbjct 9228 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCAGGAGCAGCTATG 9169 Query 5483 ATGTTATACGTTTCTTCC 5500 || ||||| ||||||||| Sbjct 9168 ATATTATAAGTTTCTTCC 9151 >seq243164 Length=1121 Score = 125 bits (138), Expect = 2e-24 Identities = 160/219 (73%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 |||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||| Sbjct 904 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 963 Query 5250 GGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGA 5309 |||| ||||| || | | ||| ||||| || || | | ||| | ||||| | Sbjct 964 GGTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 1023 Query 5310 CTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 5369 | || || ||||| || || || || || || |||||||||||| ||| || | || | Sbjct 1024 CGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAG 1083 Query 5370 TAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGA 5408 | | ||| || | || || ||||||| ||| | ||||| Sbjct 1084 TGAACCAGATACCTACTACAGGCCAAGCAGCTA-GAAGA 1121 >seq72959 Length=7288 Score = 109 bits (120), Expect = 2e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 5303 TCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCC 5362 ||||| | || || ||||| || || || || || || |||||||||||| ||| || Sbjct 646 TCAACTATGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCT 705 Query 5363 ATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGG 5422 | || || | || || | || || ||||||| | | ||||||||||||||| ||| Sbjct 706 AAAGCAGTGAATCAGATACCTACTACAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGA 765 Query 5423 CTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGC 5475 |||||| || |||||||| |||||||| | || ||||| || |||||||| Sbjct 766 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGC 818 >seq152958 Length=648 Score = 102 bits (112), Expect = 2e-17 Identities = 129/176 (73%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 6003 TTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTG 6062 ||||||| ||||||||||| | || |||||||| || || || || || | ||| || | Sbjct 469 TTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGAG 528 Query 6063 CAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGA 6122 |||| | ||| || | |||||| || ||||||| | || | | || ||||| || | Sbjct 529 CAGCAATGAAGGCAACAATAAATACATAAGTTGCGATCAATAAGGTAGGGATCATCAAAA 588 Query 6123 CACCAAACCACCCCACAT-AGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||||||||| || | | | || || || | |||||| || | ||||| |||||| Sbjct 589 CACCAAACCATCCAATGTAAAAGACGATTTTCGGTGCTGGTTATCCAGTTACAGAA 644 >seq48412 Length=5542 Score = 89.7 bits (98), Expect = 2e-13 Identities = 97/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 5579 CCATGCATAGCAGCGAACA--AAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGA 5636 |||| ||||||| ||| | |||| | |||||||| ||||| | || | |||||| | Sbjct 1958 CCATACATAGCACTGAATAGGAAGC--CGCCGAATACACCAGCTATGCCTAACATGTGAA 2015 Query 5637 ACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAG 5696 | || ||||||||||| ||||| || ||||||| ||| | ||| || || ||||||||| Sbjct 2016 ATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAGTACAATCATGAAATTGAAAGTACCAC 2075 Query 5697 AGATACC 5703 ||| || Sbjct 2076 GGATTCC 2082 >seq79347 Length=11633 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 5429 TTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTA 5488 || || |||||||| ||||| || | || ||||| || |||||||| || || || ||| Sbjct 740 TTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTA 681 Query 5489 TACGTTTCTTCCTCTTGGCCGAATTTATATCC 5520 || |||||||||||||| |||||| |||| || Sbjct 680 TAAGTTTCTTCCTCTTGACCGAATCTATAACC 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152152914551286