Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq32040 165 2e-36 seq243164 116 1e-21 seq4237 105 2e-18 seq72959 102 2e-17 seq4239 91.5 4e-14 >seq32040 Length=2773 Score = 165 bits (182), Expect = 2e-36 Identities = 202/276 (73%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 25902 CATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACC 25961 ||||||||| ||||| || ||||| || |||| ||| || |||||||| || ||||| || Sbjct 2537 CATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCC 2478 Query 25962 AAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAA 26021 ||||||||||||| | ||||| | ||| |||| ||||||| ||||| |||||| Sbjct 2477 TAGAGGCATACCATTCAAAAAACTTCTTTGACCAATTGGGTAGATCAAGAAAACAGCAGT 2418 Query 26022 TGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATA 26081 || ||||||||||| |||||||| || ||| ||||| || | ||| || || | | Sbjct 2417 AGCAGCTGCAACAGGAGCTGAATATGCAACATCAATCCAAGGGCGCATACCCAGACGGAA 2358 Query 26082 ACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAAT 26141 ||||| |||||| | || |||| |||| | | || | | ||||| | ||||| Sbjct 2357 ACTAAATTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAAT 2298 Query 26142 AAGTTGATATGGTCCACCGTTATACAACCACTCGTC 26177 || | ||| || || ||||| || ||||| || || Sbjct 2297 TAGCTCATAAGGACCGCCGTTGTATAACCATTCATC 2262 >seq243164 Length=1121 Score = 116 bits (128), Expect = 1e-21 Identities = 155/214 (72%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 909 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 968 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||||| |||| ||| |||||||| || | || | || | |||||| || || Sbjct 969 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 1028 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| || || | ||| || | | Sbjct 1029 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 1088 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGA 25666 || || | || ||||||||||| | ||||| Sbjct 1089 CAGATACCTACTACAGGCCAAGCAGCTA-GAAGA 1121 >seq4237 Length=12380 Score = 105 bits (116), Expect = 2e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25560 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 25619 ||||| || || |||||||| || || || || || |||||||||||| || || || Sbjct 9349 ATCAATCACGGATTGATTGAAATTGAAACCATTTAGGTTAAAAGCCATAATGTTGATACC 9290 Query 25620 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACG 25679 | ||| || | | | || | || |||||| ||| |||||||| |||||| ||| Sbjct 9289 TAAAGCAGTGAACTAGATACCTACTACAAGCCAAGTAGCTAGGAAGAAGTGTAAAGAACG 9230 Query 25680 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 25739 ||| || || |||||||| |||||||| | || ||||| || ||| |||| || | Sbjct 9229 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCAGGAGCAGCTAT 9170 Query 25740 AATGTTATACGTCTCTTC 25757 || ||||| || ||||| Sbjct 9169 GATATTATAAGTTTCTTC 9152 >seq72959 Length=7288 Score = 102 bits (112), Expect = 2e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 25560 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 25619 |||||| | || || ||||| || || || || || || |||||||||||| || || Sbjct 645 ATCAACTATGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 704 Query 25620 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACG 25679 | ||| || | || || | || ||||||||| | ||||||||||||||| ||| Sbjct 705 TAAAGCAGTGAATCAGATACCTACTACAGGCCAAGCAACTAGGAAGAAATGTAAAGAACG 764 Query 25680 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGC 25733 ||| || || |||||||| |||||||| | || ||||| || |||||||| Sbjct 765 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGC 818 >seq4239 Length=6188 Score = 91.5 bits (100), Expect = 4e-14 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25560 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 25619 ||||| || || || ||||| || || || || || || ||||||| | || || || Sbjct 1413 ATCAATTACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCACAATGCCGATACC 1354 Query 25620 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACG 25679 | || || | | | || | || ||||||||||| |||||||| || ||| ||| Sbjct 1353 TAAAGTAGTGAACTAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACG 1294 Query 25680 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 25739 ||| || || |||||||| ||||||| | || ||||| || |||||||| || | Sbjct 1293 AGAATTGTTGAAACTAGCATATGGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAT 1234 Query 25740 AATGTTATACGTCTCTTC 25757 || ||||| || ||||| Sbjct 1233 GATATTATAAGTTTCTTC 1216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151499049019076