Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq167565 125 5e-24 seq107869 125 5e-24 seq88321 125 5e-24 seq115376 113 3e-20 seq112091 113 3e-20 seq117103 102 6e-17 seq189138 91.5 1e-13 seq103813 89.7 4e-13 seq107102 87.8 1e-12 seq64482 86.0 5e-12 seq2978 82.4 6e-11 >seq167565 Length=877 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | |||| ||| | ||| || || |||||| || ||||||||||| | Sbjct 51 CCTCCCCTCAAGCGCAGCACGAGATGAAGGGTCGACTCTTTCTGTATATTGTAATCGGCG 110 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| |||| |||||| ||||| || || || ||||||||||||| || Sbjct 111 AGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGG 170 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || || | | | | || || ||||||| Sbjct 171 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCCGAGCTCTCCACC 230 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| ||||| || ||||||| || || || || |||||||| Sbjct 231 TCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 277 >seq107869 Length=8698 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | |||| ||| | ||| || || |||||| || ||||||||||| | Sbjct 7477 CCTCCCCTCAAGCGCAGCACGAGATGAAGGGTCGACTCTTTCTGTATATTGTAATCGGCG 7536 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| |||| |||||| ||||| || || || ||||||||||||| || Sbjct 7537 AGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGG 7596 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || || | | | | || || ||||||| Sbjct 7597 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCCGAGCTCTCCACC 7656 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| ||||| || ||||||| || || || || |||||||| Sbjct 7657 TCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 7703 >seq88321 Length=3664 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | |||| ||| | ||| || || |||||| || ||||||||||| | Sbjct 2247 CCTCCCCTCAAGCGCAGCACGAGATGAAGGGTCGACTCTTTCTGTATATTGTAATCGGCG 2306 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| |||| |||||| ||||| || || || ||||||||||||| || Sbjct 2307 AGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGTTGATCCGGTGGG 2366 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || || | | | | || || ||||||| Sbjct 2367 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATCGTGTCCGAGCTCTCCACC 2426 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||| ||||| || ||||||| || || || || |||||||| Sbjct 2427 TCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 2473 >seq115376 Length=10371 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || || ||| || ||||| ||||| || | || | | Sbjct 8112 AGGCGGAGCACCAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTCCTC 8053 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 | || |||| |||||||||||| || ||||||| |||||| |||| ||||| | ||||| Sbjct 8052 CCATCCTCCAGCTGCTTACCGGCGAAAATCAGTCTCTGTTGGTCCGGTGGGATC-CCCTC 7994 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||| || ||| | | |||| ||||| ||| ||||||| || Sbjct 7993 CTTGTCTTGGATCTTTGCCTTAACATTATCAACAGTGTCTGAACTCTCAACCTCCAAGGT 7934 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| |||| || || || ||||||||||| Sbjct 7933 GATGGTTTTTCCTGTCAGGGTCTTGACGAAAATCTGCAT 7895 >seq112091 Length=14418 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || || ||| || ||||| ||||| || | || | | Sbjct 11574 AGGCGGAGCACCAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTCCTC 11633 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGGAACGCCCTC 48667 | || |||| |||||||||||| || ||||||| |||||| ||| |||||| | ||||| Sbjct 11634 CCATCCTCCAGCTGCTTACCGGCGAAAATCAGTCTCTGTTGGTCCGGTGGGATC-CCCTC 11692 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||| || ||| | | |||| ||||| ||| ||||||| || Sbjct 11693 CTTGTCTTGGATCTTTGCCTTAACATTATCAACAGTGTCTGAACTCTCAACCTCCAAGGT 11752 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| |||| || || || ||||||||||| Sbjct 11753 GATGGTTTTTCCTGTCAGGGTCTTGACGAAAATCTGCAT 11791 >seq117103 Length=17306 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||| || || || ||||||| || | | | || ||| Sbjct 8049 ACCAAGTGCAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGTGTCCTCCCATCTTCC 8108 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| |||||||| ||||| | ||| || || | || | |||||||||||| Sbjct 8109 AGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGG 8168 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || ||| | | | ||||| ||||||||||| || || |||||| Sbjct 8169 ATCTTTGCCTTCACATTGTCAATGGTGTCTGAACTCTCCACCTCCAGAGTGATGGTTTTT 8228 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| ||| || |||||||||||||| Sbjct 8229 CCGGTCAGAGTCTTGACAAAAATCTGCAT 8257 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | |||||| || ||| |||||||| |||||||| | || | || Sbjct 8268 AGGCGAAGCACAAGATGTAGAGTTGACTCCTTTTGAATGTTGTAATCCGCCAGTGTCCGG 8327 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||| ||||| || |||| | ||| ||||| | ||||| ||| ||| Sbjct 8328 CCATCCTCCAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCC 8387 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | | | || | ||| || |||| ||| Sbjct 8388 TTGTCCTGTATCTTAGCTTTGACATTATCAATGGTATCCAAGCTCTCGACTTCCAAAGTA 8447 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || |||||||||||||| Sbjct 8448 ATGGTCTTCCCAGTAAGGGTCTTGACAAAAATCTGCAT 8485 >seq189138 Length=1569 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | |||| ||| || || |||||| || || || || |||| Sbjct 947 CCGCCACGGAGACGGAGGACCAGATGCAGGGTCGACTCTTTCTGGATGTTATAGTCAGCC 888 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | |||| || | ||||| ||||| || ||||| | ||| ||||||| || Sbjct 887 AGAGTCCTCCCGTCTTCAAGTTGCTTCCCGGCGAAAATCAGCCTCTGCTGATCCGGCGGG 828 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||| || ||||| || || | | | | ||||| ||||||| Sbjct 827 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCTGAACTCTCCACC 768 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || ||||| |||| ||| || ||||| ||||||||| Sbjct 767 TCCAAAGTGATGGTCTTTCCGGTCAGAGTCTTGACAAAGATCTGCATC 720 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| |||||||| ||||| |||| || | || | || || | ||||| || || || Sbjct 684 CTCCTTTTGAATGTTGTAGTCAGCCAGTGTCCGGCCATCCTCGAGTTGCTTCCCTGCGAA 625 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| |||||||| || | |||| || |||||||| |||||| ||| ||| Sbjct 624 AATCAAACGCTGTTGGTCTGGCGGAATTCCTTCCTTGTCCTGTATCTTTGCTTTGACATT 565 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||||| || || || || || || | || ||||| Sbjct 564 ATCGATCGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTTAC 505 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 504 AAAAATCTGCAT 493 >seq103813 Length=13362 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||||||||| | || | ||| |||| |||| |||||| || || || Sbjct 11918 CTCCTTCTGGATATTGTAATCGGCGAGGGTGCGACCGTCCTCCAGCTGCTTTCCAGCGAA 11977 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||||| || | ||||||||| || |||||| || || Sbjct 11978 GATAAGCCGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTTGCCTTCACGTT 12037 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| ||| ||||| || || |||| || || || Sbjct 12038 GTCGATCGTGTCCGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCAGTCAGGGTCTTGAC 12097 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 12098 GAAGATCTGCAT 12109 >seq107102 Length=7485 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | || || || || || |||||| |||||||| ||||| | Sbjct 3728 GCCGCCGCGCAGACGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAATATTATAATCGGC 3787 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | | || |||| ||||| |||||||| ||||| | ||| || |||| || Sbjct 3788 CAGTGTCCTCCCATCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGG 3847 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||| || ||||| || ||| | | | ||||| ||||| Sbjct 3848 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAACTTTCCAC 3907 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| ||| || |||||||||||||| Sbjct 3908 CTCCAGAGTGATGGTCTTACCGGTCAGAGTCTTGACAAAAATCTGCAT 3955 >seq64482 Length=1502 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||| ||||| || || |||| | | | || |||| || Sbjct 722 ACCAAGTGCAGGGTCGACTCTTTCTGAATGTTATAGTCAGCCAAAGTCCGGCCGTCCTCA 663 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| |||||||| ||||| | ||| || |||| || | ||||||||| || | Sbjct 662 AGTTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGA 603 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | ||||| ||||||||||| || || || || Sbjct 602 ATCTTCGCCTTCACGTTGTCGATGGTGTCTGAACTCTCCACCTCCAAAGTGATGGTCTTC 543 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || |||| || || ||||| ||||||||| Sbjct 542 CCAGTCAGGGTCTTGACAAAGATCTGCATC 513 >seq2978 Length=2151 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | || || || || || |||||| ||||| || ||||| | Sbjct 259 GCCGCCGCGCAGACGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAATGTTATAATCGGC 200 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | | | || |||| ||||| |||||||| ||||| | ||| || |||| || Sbjct 199 CAGTGTCCTCCCATCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGG 140 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||| || ||||| || ||| | | | ||||| ||||| Sbjct 139 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCTGAACTTTCCAC 80 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || |||| ||| || |||||||||||||| Sbjct 79 CTCCAGAGTGATGGTCTTACCGGTCAGAGTCTTGACAAAAATCTGCAT 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379665501859323