Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq243164 159 4e-34 seq4239 149 7e-31 seq72959 143 3e-29 seq4237 141 1e-28 seq32040 134 2e-26 seq48412 104 3e-17 seq79347 86.0 7e-12 >seq243164 Length=1121 Score = 159 bits (176), Expect = 4e-34 Identities = 170/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 163268 TCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTA 163327 ||||| | ||||| | ||||| || | |||||||||||||| | ||| | |||| Sbjct 1121 TCTTC-TAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTA 1063 Query 163328 TGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGTGGTA 163384 |||| |||||||| || |||||||| |||||||||||||| ||||| |||| || Sbjct 1062 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGT- 1004 Query 163385 AAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGC 163444 || ||| ||| ||||| ||||| |||| | || ||||||||||||||||||| Sbjct 1003 --GTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGC 946 Query 163445 ACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 163486 | || ||||||||||| |||||||| || ||||| ||||||| Sbjct 945 ATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 904 >seq4239 Length=6188 Score = 149 bits (164), Expect = 7e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 163177 GAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTAT 163236 ||||| ||||| || || | ||||||||||| || ||||| || |||||||||| ||| Sbjct 1216 GAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCCATAT 1275 Query 163237 GCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGC 163296 || ||||||||| || ||||| | ||||||||||| ||||| | ||||| || | Sbjct 1276 GCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 1335 Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 |||| ||||||| | | ||| | | | |||| |||||||| || |||||||| ||| Sbjct 1336 ATCTAGTTCACTACTTTAGGTATCGGCATTGTGGCTTTCAACCTAAATGGTTTCAATTTC 1395 Query 163357 AACCAATCCGTCGTTGA 163373 ||||||||||| |||| Sbjct 1396 AACCAATCCGTAATTGA 1412 >seq72959 Length=7288 Score = 143 bits (158), Expect = 3e-29 Identities = 136/174 (78%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 163200 TGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTC 163259 ||||||||| || ||||| || ||||||||||| ||||| ||||||||| || ||||| Sbjct 819 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 760 Query 163260 ACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGT 163319 | || |||||||| | ||| | ||||| || | ||||| |||||||| | ||| | Sbjct 759 TTTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGATTCACTGCTTTAGGTAT 700 Query 163320 GTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA 163373 |||||||| |||||||| || |||||||| |||||||||||| | ||||| Sbjct 699 CAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCATAGTTGA 646 >seq4237 Length=12380 Score = 141 bits (156), Expect = 1e-28 Identities = 152/199 (76%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 163177 GAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTAT 163236 ||||| ||||| || || | ||||||| ||| || ||||| || ||||||||||| ||| Sbjct 9152 GAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTTCCAATAT 9211 Query 163237 GCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGC 163296 || ||||||||| || ||||| | ||||||||||| ||| | | | ||| || | Sbjct 9212 GCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTGTAGTAGGT 9271 Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAAC--TATGGCATTCAACCTTAACGGTTTCAACT 163354 |||| ||||||||| | | || ||||| |||||| || ||||| || |||||||| | Sbjct 9272 ATCTAGTTCACTGCTTTAG--GTATCAACATTATGGCTTTTAACCTAAATGGTTTCAATT 9329 Query 163355 TCAACCAATCCGTCGTTGA 163373 |||| |||||||| |||| Sbjct 9330 TCAATCAATCCGTGATTGA 9348 >seq32040 Length=2773 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| |||||||| || || ||| | |||||||| |||||||| ||||||||| Sbjct 2337 GGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGATGTTGCATAT 2396 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || || || | || || ||||| |||||| |||| || | |||||| | | Sbjct 2397 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAAGAAGT 2456 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || | | | |||||||| || |||||||||||||| |||| |||| | || ||||| Sbjct 2457 TTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 2516 Query 163012 GCAGAGCACAACATCCTAATGCAC 163035 || |||||||||||||| ||| || Sbjct 2517 GCTGAGCACAACATCCTTATGTAC 2540 >seq48412 Length=5542 Score = 104 bits (114), Expect = 3e-17 Identities = 115/151 (76%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 162981 TGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTT 163040 ||||||||| || | |||| | || |||| || |||||||||||||| |||||||| || Sbjct 2074 TGGTACTTTCAATTTCATGATTGTACTCCAGGCTGAGCACAACATCCTTATGCACCCATT 2015 Query 163041 CCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTC 163100 || ||| | || | || ||||||||||| || | || || ||||||||| | ||||| Sbjct 2014 TCACATGTTAGGCATAGCTGGTGTATTCGGCGGCTTCCTATTCAGTGCTATGTATGGTTC 1955 Query 163101 TCTTGTTACT-TCTTCTCTTATCAGAGAAAC 163130 |||| || | ||| | | || |||||||| Sbjct 1954 -CTTGGTAATCTCTAGTTTGATGAGAGAAAC 1925 >seq79347 Length=11633 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||||| ||||| ||||| ||||| ||||| || || || ||||||||||| || ||| Sbjct 649 GGTTATAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 708 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAA 163247 || || ||||| ||||| ||||| |||||| Sbjct 709 GGCCGATTGATTTTCCAATATGCTAGTTTCAA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551190477646440