Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq189138 95.1 1e-14 seq117103 95.1 1e-14 seq64482 95.1 1e-14 seq115376 93.3 4e-14 seq112091 93.3 4e-14 seq2978 91.5 1e-13 seq107102 86.0 5e-12 seq64485 86.0 5e-12 >seq189138 Length=1569 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || ||||| || || ||| || || Sbjct 264 AATGCAAATCTTTGTCAAGACTCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 323 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | || |||| || |||| || ||||| || || | ||| ||||| Sbjct 324 TGATACCATCGACAATGTCAAAGCGAAAATTCAG-GACAAGGAAGGCATTCCCCCAGATC 382 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||| ||||| ||||| || || || | |||||| || ||| |||| ||||||| Sbjct 383 AGCAGAGGCTTATTTTTGCTGGGAAGCAGCTAGAAGATGGTAGGACTCTGGCAGATTATA 442 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| || |||||||| ||||| ||| |||| Sbjct 443 ACATCCAGAAAGAATCGACTCTTCACTTGGT 473 >seq117103 Length=17306 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || || |||||||| || || ||| ||| Sbjct 8258 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAAACCATCACTCTGGAGGTGGAGAGTTC 8199 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | || | ||| ||| ||| ||||| ||||| | || ||| || Sbjct 8198 AGACACCATTGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCA 8139 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || || ||| |||||||| | || |||| |||||||| Sbjct 8138 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGATGGGAGGACACTGGCTGATTATAA 8079 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| || ||||| || ||||||||| |||| Sbjct 8078 CATCCAGAAAGAGTCAACTCTGCACTTGGT 8049 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || || | || || || || |||||| ||| ||| |||| Sbjct 8941 ATGCAGATATTTGTGAAGACCCTCACTGGCAAGACTATTACCCTCGAGGTTGAAAGTTCA 8882 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| ||||||| ||||| || ||| | ||| ||||||| Sbjct 8881 GACACCATCGATAACGTAAAGGCAAAAATCCAGGACAAGGAAGGAATTCCCCTAGATCAG 8822 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || || |||||||| ||| | || ||| | || | || || || ||| Sbjct 8821 CAGAGGTTGATTTTCGCGGGCAAGCAACTTGAGGATGGCAGGACGCTTGCAGACTACAAC 8762 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| ||||| || || ||| |||| Sbjct 8761 ATTCAAAAGGAATCCACCCTTCACTTGGT 8733 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 |||| |||| || ||||| || || | ||| |||||| || || ||||||||||| Sbjct 8634 AAGCCAAAATTCAG-GACAAGGAAGGCATTCCCCCAGATCAGCAAAGGCTTATCTTTGCT 8576 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 || |||||| | || ||| || ||| |||| ||||||||||| || || || || ||| Sbjct 8575 GGGAAACAACTTGAGGATGGTAGGACTTTGGCAGATTATAACATCCAGAAGGAGTCCACT 8516 Query 28752 CTGCACATGGT 28762 || ||| |||| Sbjct 8515 CTTCACTTGGT 8505 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || || ||||| ||| || ||| ||| Sbjct 9169 ATGCAAATTTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTCGAAAGCTCA 9110 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || || ||| ||||| |||||| | ||| || || Sbjct 9109 GACACAATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAGGGAATCCCCCCTGACCAG 9050 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || || | || ||| ||| |||| ||||||||| Sbjct 9049 CAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAGGATGGACGCACTTTGGCTGATTATAAC 8990 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || ||||| || || ||| |||| Sbjct 8989 ATTCAGAAGGAATCCACCCTTCACTTGGT 8961 >seq64482 Length=1502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || || || || || ||| ||| || Sbjct 57 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTC 116 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | || |||| ||||||| || ||||| || || | ||| ||||| Sbjct 117 TGACACCATCGACAATGTCAAAGCAAAAATTCAG-GACAAGGAAGGCATTCCCCCAGATC 175 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||| ||||| ||||| || ||||| | || ||| || ||| |||| ||||||| Sbjct 176 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATA 235 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| || ||||| || ||||| ||| |||| Sbjct 236 ACATCCAGAAAGAGTCGACTCTTCACTTGGT 266 >seq115376 Length=10371 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || || || || ||| ||| |||| || Sbjct 6755 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 6814 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || || | || | || ||||||| ||||| || || | || || || Sbjct 6815 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 6874 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| ||||| || |||||||| ||| |||||||||||||| Sbjct 6875 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 6934 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || || || || ||| |||| Sbjct 6935 ATTCAGAAGGAGTCCACCCTCCACTTGGT 6963 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || || || ||| ||| |||| || Sbjct 6983 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCC 7042 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || ||||||| ||||| || || | || ||| || Sbjct 7043 GACACAATTGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 7102 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| ||||| || |||||||| ||| |||| ||||||||| Sbjct 7103 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCTGATTATAAC 7162 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || || || || ||| |||| Sbjct 7163 ATTCAGAAGGAGTCCACCCTCCACTTGGT 7191 >seq112091 Length=14418 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || || || || ||| ||| |||| || Sbjct 12931 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 12872 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || || | || | || ||||||| ||||| || || | || || || Sbjct 12871 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 12812 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| ||||| || |||||||| ||| |||||||||||||| Sbjct 12811 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 12752 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || || || || ||| |||| Sbjct 12751 ATTCAGAAGGAGTCCACCCTCCACTTGGT 12723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || || || ||| ||| |||| || Sbjct 12703 ATGCAAATTTTTGTGAAGACTCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCC 12644 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || ||||||| ||||| || || | || ||| || Sbjct 12643 GACACAATTGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 12584 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| ||||| || |||||||| ||| |||| ||||||||| Sbjct 12583 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCTGATTATAAC 12524 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || || || || ||| |||| Sbjct 12523 ATTCAGAAGGAGTCCACCCTCCACTTGGT 12495 >seq2978 Length=2151 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || ||||| ||||| || || |||| ||| Sbjct 31 AATGCAGATTTTTGTCAAGACTCTGACCGGTAAGACCATCACTCTGGAGGTGGAAAGTTC 90 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | || | ||| || ||| || || ||||| | || || || Sbjct 91 AGACACCATTGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCGGACCA 150 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || || ||| |||||||| | || ||||||||||||| Sbjct 151 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGATGGGAGGACACTGGCCGATTATAA 210 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||| ||||| || ||||||||| Sbjct 211 CATTCAGAAAGAGTCGACTCTGCAC 235 >seq107102 Length=7485 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || ||||| ||||| || || |||| ||| Sbjct 3956 AATGCAGATTTTTGTCAAGACTCTGACCGGTAAGACCATCACTCTGGAGGTGGAAAGTTC 3897 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | || | ||| || ||| || || ||||| | || || || Sbjct 3896 AGACACCATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCGGACCA 3837 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || || ||| |||||||| | || ||||||||||||| Sbjct 3836 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGATGGGAGGACACTGGCCGATTATAA 3777 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||||| ||||| || ||||||||| Sbjct 3776 TATTCAGAAAGAGTCGACTCTGCAC 3752 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || |||| || || || || || ||| || || Sbjct 4412 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 4353 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | || |||| || |||| || ||||| || || | ||| ||||| Sbjct 4352 CGACACCATTGACAATGTCAAAGCCAAAATTCAG-GACAAGGAAGGCATTCCCCCAGATC 4294 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | || || ||||||||||| || |||||| | || ||| || ||| |||| ||||| | Sbjct 4293 AGCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACA 4234 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| || || || || ||||| ||| |||| Sbjct 4233 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 4203 >seq64485 Length=1617 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || || || || || ||| ||| || Sbjct 27 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTC 86 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | || |||| || |||| || ||||| || || | ||| |||| Sbjct 87 TGATACCATCGACAATGTCAAAGCGAAAATTCAG-GACAAGGAAGGCATTCCCCCGGATC 145 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||| ||||| ||||| || ||||| | || ||| || ||| |||| ||||||| Sbjct 146 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATA 205 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| || ||||| || ||||| ||| |||| Sbjct 206 ACATCCAGAAAGAGTCGACTCTTCACTTGGT 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423984208661379