Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq32040 167 7e-37 seq243164 123 8e-24 seq72959 109 2e-19 seq4239 102 2e-17 seq4237 102 2e-17 seq152958 96.9 1e-15 seq48412 86.0 2e-12 >seq32040 Length=2773 Score = 167 bits (184), Expect = 7e-37 Identities = 207/278 (74%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 18284 CATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACC 18343 ||||||||| ||||| || || |||||||| | |||||| ||||||||||| ||| || Sbjct 2537 CATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCC 2478 Query 18344 AAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AG 18401 ||||||||||||| | ||||| | ||| |||| || || | | ||||| || | || Sbjct 2477 TAGAGGCATACCATTCAAAAAACTTCTTTGACCAATTGGGTAGATCAAGAAA-ACAGCAG 2419 Query 18402 AAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTA 18461 || ||||||| || || || ||||| |||||| |||||| ||||||||||| || | Sbjct 2418 TAG-CAGCTGCAACAGGAGCTGAATATGCAACATCAATCCAAGGGCGCATACCCAGACGG 2360 Query 18462 TAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACA 18521 |||||| |||||| | || ||||||||| || | || | | ||||| | ||| Sbjct 2359 AAACTAAATTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACA 2300 Query 18522 ATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTC 18559 || || | ||| || || ||||| |||||||| || || Sbjct 2299 ATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATC 2262 >seq243164 Length=1121 Score = 123 bits (136), Expect = 8e-24 Identities = 157/215 (73%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 908 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 967 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | || | | |||||||| ||| | || | ||| | | || | ||| Sbjct 968 AGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGA 1027 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || |||||||||||| ||| || | || || | Sbjct 1028 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAA 1087 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGA 18048 ||| || | || |||||||||| | |||||| Sbjct 1088 CCAGATACCTACTACAGGCCAAGCAG-CTAGAAGA 1121 >seq72959 Length=7288 Score = 109 bits (120), Expect = 2e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 17946 ACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATA 18005 || |||||||||||||| ||||| ||||| || || |||||||||||| ||| || | | Sbjct 649 ACTATGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAA 708 Query 18006 GAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTA 18065 | || | || || | || ||||||||| | | ||||||||||| | | | Sbjct 709 GCAGTGAATCAGATACCTACTACAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGAGAA 768 Query 18066 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGC 18115 ||||| || |||||||| |||||||| | || ||||| || |||||||| Sbjct 769 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGC 818 >seq4239 Length=6188 Score = 102 bits (112), Expect = 2e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 |||||||||||| ||||| ||||| || || ||||||| | || ||| || | || || Sbjct 1404 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCACAATGCCGATACCTAAAGTAGT 1345 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | | | || | || ||||||||||| | |||||| || | | | |||||| Sbjct 1344 GAACTAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACGAGAATTGTT 1285 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| ||||||| | || ||||| || |||||||| || | |||||||| Sbjct 1284 GAAACTAGCATATGGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTATGATATTATA 1225 Query 18131 CGTCTCTTC 18139 || ||||| Sbjct 1224 AGTTTCTTC 1216 >seq4237 Length=12380 Score = 102 bits (112), Expect = 2e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 |||||| ||||| ||||| ||||| || |||||||||||| || ||| || | || || Sbjct 9340 GGATTGATTGAAATTGAAACCATTTAGGTTAAAAGCCATAATGTTGATACCTAAAGCAGT 9281 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | | | || | || |||||| ||| | |||||| |||| | | |||||| Sbjct 9280 GAACTAGATACCTACTACAAGCCAAGTAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTT 9221 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || ||| |||| || | |||||||| Sbjct 9220 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCAGGAGCAGCTATGATATTATA 9161 Query 18131 CGTCTCTTC 18139 || ||||| Sbjct 9160 AGTTTCTTC 9152 >seq152958 Length=648 Score = 96.9 bits (106), Expect = 1e-15 Identities = 129/178 (72%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 18643 TTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAG 18702 ||||||| |||| | ||| || ||||| |||||||||||||| || || | ||||||| Sbjct 469 TTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTATTGGAGGAG 528 Query 18703 CAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTA 18762 |||||| || |||| | |||| | || |||| | || | | ||||||||| | | Sbjct 529 CAGCAATGAAGGCAACAATAAATACATAAGTTGCGATCAATAAGGTAGGGATCATCAAAA 588 Query 18763 CCCCAAACCACCCCACGT-AGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 | |||||||| || | || | || || || | || || || | ||||| ||| |||| Sbjct 589 CACCAAACCATCCAATGTAAAAGACGATTTTCGGTGCTGGTTATCCAGTTACAGAAAC 646 >seq48412 Length=5542 Score = 86.0 bits (94), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 18224 CATAGCAGCGAATA--AAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGA 18281 ||||||| ||||| |||| | |||||||| || || | || | ||| || || || Sbjct 1963 CATAGCACTGAATAGGAAGC--CGCCGAATACACCAGCTATGCCTAACATGTGAAATGGG 2020 Query 18282 TGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACC 18334 ||||||||||| ||||| || || |||| ||| | |||||||||||||||||| Sbjct 2021 TGCATAAGGATGTTGTGCTCAGCCTGGAGTACAATCATGAAATTGAAAGTACC 2073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150826045959094