Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq32040 163 8e-36 seq243164 141 3e-29 seq4239 136 1e-27 seq72959 131 5e-26 seq4237 129 2e-25 seq79347 89.7 1e-13 >seq32040 Length=2773 Score = 163 bits (180), Expect = 8e-36 Identities = 203/278 (73%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 21920 CATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCC 21979 |||||| || ||||||||||||||||| || | |||| ||||||| || || || || || Sbjct 2537 CATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCC 2478 Query 21980 CAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGT 22039 | |||||| ||| ||||| | || |||| || || | | ||| |||||||| Sbjct 2477 TAGAGGCATACCATTCAAAAAACTTCTTTGACCAATTGGGTAGATCAAGAAAACAGCAGT 2418 Query 22040 CGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATA 22099 ||||| || |||||||| || || |||||| ||||| || | ||| || || || | Sbjct 2417 AGCAGCTGCAACAGGAGCTGAATATGCAACATCAATCCAAGGGCGCATACCCAGACGGAA 2358 Query 22100 GCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGT 22159 |||| ||||||||| || ||||||||| | || |||| | |||||| | || | Sbjct 2357 ACTAAATTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAAT 2298 Query 22160 GAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAA 22197 || | | |||||||||||||| | ||||||||||| Sbjct 2297 TAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAA 2260 >seq243164 Length=1121 Score = 141 bits (156), Expect = 3e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 909 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 968 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 ||||| |||| ||| ||||||||||| || || || | || | | | | | | ||| Sbjct 969 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 1028 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | |||||||||||| || | || | |||| ||| Sbjct 1029 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 1088 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAA 21681 || |||||||| |||||||| ||||| |||| Sbjct 1089 CAGATACCTACTACAGGCCAAGCAGCTAGAA 1119 >seq4239 Length=6188 Score = 136 bits (150), Expect = 1e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 21588 GATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCA 21647 |||||||| || ||||||||||| | ||||||||||| | | || | | || Sbjct 1403 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCACAATGCCGATACCTAAAGTAGTG 1344 Query 21648 AACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTA 21707 ||| | |||||||| |||||||| ||||| || ||||| || | | ||| ||||| || Sbjct 1343 AACTAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACGAGAATTGTTG 1284 Query 21708 AAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAA 21767 || ||||||||| ||||||| | || |||||||| || |||||||| | ||||| ||| Sbjct 1283 AAACTAGCATATGGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTATGATATTATAA 1224 Query 21768 GTCTCTTCCTCTTGA 21782 || |||||| | ||| Sbjct 1223 GTTTCTTCCACGTGA 1209 >seq72959 Length=7288 Score = 131 bits (144), Expect = 5e-26 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 21588 GATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCA 21647 |||||||| || ||||||||||| | |||||||||||| || | || | |||| Sbjct 655 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTG 714 Query 21648 AACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTA 21707 || || |||||||| |||||||| ||| | || |||||||| | | ||| ||||| || Sbjct 715 AATCAGATACCTACTACAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGAGAATTGTTG 774 Query 21708 AAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCA 21752 || ||||||||||||||||| | || |||||||| || |||||| Sbjct 775 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCA 819 >seq4237 Length=12380 Score = 129 bits (142), Expect = 2e-25 Identities = 148/197 (75%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 21588 GATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATG--GTAGACACGCCAAGCGCAG 21645 ||||| || || ||||||||||| | ||| |||||||| || || || |||| || Sbjct 9339 GATTGATTGAAATTGAAACCATTTAGGTTAAAAGCCATAATGTTGATACCTAAAGC--AG 9282 Query 21646 CAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTAT 21705 ||| | |||||||| ||| |||| | ||| || ||||| || | | ||| ||||| | Sbjct 9281 TGAACTAGATACCTACTACAAGCCAAGTAGCTAGGAAGAAGTGTAAAGAACGAGAATTGT 9222 Query 21706 TAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGT 21765 | || ||||||||||||||||| | || |||||||| || ||||||| | ||||| | Sbjct 9221 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCAGGAGCAGCTATGATATTAT 9162 Query 21766 AAGTCTCTTCCTCTTGA 21782 |||| |||||| | ||| Sbjct 9161 AAGTTTCTTCCACGTGA 9145 >seq79347 Length=11633 Score = 89.7 bits (98), Expect = 1e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 21705 TTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTG 21764 || || |||||||||||||| || | || |||||||| || |||||||| || ||||| Sbjct 740 TTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTA 681 Query 21765 TAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 ||||| |||||||||||||| || | ||||| Sbjct 680 TAAGTTTCTTCCTCTTGACCGAATCTATAACC 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145732273983780