Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq109320 118 1e-21 seq95628 114 2e-20 seq122528 105 8e-18 seq13693 102 1e-16 >seq109320 Length=8125 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||| |||||||| | || || || || || ||||| |||||||||||||| Sbjct 1980 TCCTTCGCGGAGCGCCTCCTGGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGCAGC 2039 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | ||| | ||||||||||| |||||||| || || |||||| || Sbjct 2040 TTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTCTCGAAC 2099 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || ||||| || ||||| |||||| Sbjct 2100 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 2129 >seq95628 Length=10288 Score = 114 bits (126), Expect = 2e-20 Identities = 306/461 (66%), Gaps = 10/461 (2%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTG-TGGATTTTCTCA 175249 |||||||| || |||| | ||||| | || ||| | | | || |||| ||||| | Sbjct 6858 TGATGTTGCTGGTGTTGATGAGGCCAAGCAGGA-CTTCATGGAAGTGGTGGAGTTTCTAA 6800 Query 175250 AGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGG 175309 | |||| ||||| | | || || ||| || ||||| || | |||||| | | Sbjct 6799 AAAAACCTGAGAGGTTTACTGCAATTGGGGCTCGTATCCCTAAGGGTGTCCTTCTAGTTG 6740 Query 175310 GTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCC 175369 || ||||| || ||||| || || || || || || || |||||| || ||| | Sbjct 6739 GTCCTCCAGGAACTGGAAAAACGCTGCTTGCAAAGGCAATTGCTGGTGAAGCAGGTGTTC 6680 Query 175370 CATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAA 175427 |||| || || | || | | | || || |||||||| |||||||| ||||| Sbjct 6679 CATTTTTCTCCATT--TCAGGTTCTGAGTTCGTAGAGATGTTCGTTGGTGTTGGTGCTTC 6622 Query 175428 AAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGA 175487 || ||||||||||| || | | ||| || ||| || || ||||| || |||| Sbjct 6621 TAGAGTTCGCGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCCTGCATTGTGTTTGTTGA 6562 Query 175488 TGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAG 175545 ||| |||||||| |||||| ||| | | |||| | | | | || |||||| || Sbjct 6561 TGAAATTGATGCTGTGGGCCGGCAGAGAGGAACTGGAATTGGAGG--AGGAAATGATGAA 6504 Query 175546 AGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGC 175605 || || || || ||||||| || | || || |||||||| ||||| | || || Sbjct 6503 AGGGAGCAGACCCTTAATCAGCTGTTGACAGAAATGGATGGTTTTGAAGGAAATACAGGT 6444 Query 175606 ATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || | ||| |||| || ||||| || | || || ||||| Sbjct 6443 ATCATTGTTGTTGCAGCAACTAACCGTGCAGACATTCTTGA 6403 >seq122528 Length=20092 Score = 105 bits (116), Expect = 8e-18 Identities = 191/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| | || | || | || ||||| | || |||||| Sbjct 11513 CCCGGGACTGGGAAGACCCTTTTGGCAAGGGCAGTGGCCGGTGAGGCTGGCGTGCCATTC 11454 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || | | ||||||||| ||||||| ||||| ||||| || ||| Sbjct 11453 TTCTCGTGTGCGGCATCCGAATTTGTGGAGTTGTTTGTGGGTGTTGGTGCTTCGAGAGTT 11394 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | || | ||||| | || | ||| || || || ||||| || ||||||||||| Sbjct 11393 AGGGACTTGTTTGAGAAGGCGAAGTCGAAAGCA-CCTTGCATTGTGTTTATTGATGAGAT 11335 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 ||||||||||| | ||| | | |||||| | || ||||| |||||||| || Sbjct 11334 CGATGCGGTGGGGAGGCAGAGAGGAGCTGGTCTTGGAGGAGGGAATGATGAGAGAGAGCA 11275 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || ||||| ||| | || ||||||||||| ||| Sbjct 11274 AACTATCAATCAGCTATTGACTGAGATGGATGGGTTT 11238 >seq13693 Length=9404 Score = 102 bits (112), Expect = 1e-16 Identities = 244/361 (68%), Gaps = 10/361 (3%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAA--GTGGTGCCAAG-ATC 175287 ||||||||||| || || ||| | ||| |||| | |||| | |||| |||| ||| Sbjct 1065 GAGATTGTGGAGTT-CTTAAGGACGCCG-GAGA-AGTTTGCAGCCGTGGGAGCAAGGATC 1009 Query 175288 CCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCC 175347 || ||| | ||||| | ||| ||||| || || |||||| | | ||| || Sbjct 1008 CCAAAAGGAGTTCTTCTAGTGGGGCCACCAGGGACAGGGAAGACCTTGTTGGCCATGGCG 949 Query 175348 ATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATG 175407 ||||| || ||| | ||||| ||| | | |||| || | || | |||||| Sbjct 948 ATCGCAGGAGAAGCTGGGGTCCCTTTCTTTTCGCTGTCTGGGTCAGAGTTCATCGAGATG 889 Query 175408 TTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAA 175467 ||||| ||||| || || ||||| || || || ||| | | || | ||| Sbjct 888 TTTGTCGGTGTAGGCGCTTTGAGGGTGCGAGACCTGTTTAACAAGGCGAAGGCGAATTCG 829 Query 175468 CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TG 175525 || || | ||||||||||||||||||||||| || || | ||| | | |||| | Sbjct 828 CCTTGCTTGGTCTTCATTGATGAGATTGATGCTGTTGGGAGGCAGAGAGGAACTGGCATC 769 Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 | | | || ||||||||||||||| |||||| | ||||| | ||||| |||||||| | Sbjct 768 GGAGG--AGGAAATGACGAGAGAGAGCAAACACTGAATCAGTTGCTCACTGAGATGGACG 711 Query 175586 G 175586 | Sbjct 710 G 710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594526341662880