Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq32040 147 3e-30 seq243164 120 4e-22 seq4239 104 3e-17 seq4237 104 3e-17 seq48412 95.1 1e-14 seq79347 82.4 9e-11 >seq32040 Length=2773 Score = 147 bits (162), Expect = 3e-30 Identities = 198/276 (72%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 8340 CATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACC 8399 |||||| ||||| ||||| || |||||||| | ||||||||| || ||||||||||| || Sbjct 2537 CATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCC 2478 Query 8400 TAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAA 8459 ||||||||| |||| | || | ||||||| ||| || | ||||| || || Sbjct 2477 TAGAGGCATACCATTCAAAAAACTTCTTTGACCAATTGGGTAGATCAAGAAAACAGCAGT 2418 Query 8460 AGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTA 8519 |||||| | || ||||| |||||| ||| ||||| || | |||||| | ||| | Sbjct 2417 AGCAGCTGCAACAGGAGCTGAATATGCAACATCAATCCAAGGGCGCATACCCAGACGGAA 2358 Query 8520 TGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAAC 8579 || ||||||| | |||||||||| || | |||| | |||||| | | || Sbjct 2357 ACTAAATTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAAT 2298 Query 8580 CAACTGATATGGACCTCCGTTATACAACCACTCATC 8615 | || ||| ||||| ||||| || ||||| ||||| Sbjct 2297 TAGCTCATAAGGACCGCCGTTGTATAACCATTCATC 2262 >seq243164 Length=1121 Score = 120 bits (132), Expect = 4e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 909 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 968 Query 7951 GCTCTGTTTAAT-ACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGA 8009 || | | ||||| | ||| |||| ||| ||| | ||| | | |||||| || || Sbjct 969 GCAC-GATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGA 1027 Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA 8069 |||||| || || || || || ||||| || ||||| |||| ||||| | || ||| || Sbjct 1028 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAA 1087 Query 8070 CCAAACACATACAACTGG 8087 ||| | || ||| || || Sbjct 1088 CCAGATACCTACTACAGG 1105 >seq4239 Length=6188 Score = 104 bits (114), Expect = 3e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 7998 ATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACC 8057 ||||| || |||||||| || || || || || ||||| || |||| ||| ||||| Sbjct 1413 ATCAATTACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCACAATGCCGATACC 1354 Query 8058 CATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCT 8117 | || ||| ||| | | || ||| || || | | ||| ||||||||||| | | | Sbjct 1353 TAAAGTAGTGAACTAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACG 1294 Query 8118 ACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAA 8176 | ||||| |||| | ||||| ||||||| |||| ||||| || ||||||||||| | Sbjct 1293 AGAATTGTTGAAACTA-GCATATGGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTA 1235 Query 8177 CAATATTATAGGTCTCTTC 8195 |||||||| || ||||| Sbjct 1234 TGATATTATAAGTTTCTTC 1216 >seq4237 Length=12380 Score = 104 bits (114), Expect = 3e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 7998 ATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACC 8057 ||||| || ||||| || || || || || || |||||||| ||||| || ||||| Sbjct 9349 ATCAATCACGGATTGATTGAAATTGAAACCATTTAGGTTAAAAGCCATAATGTTGATACC 9290 Query 8058 CATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCT 8117 | || ||| ||| | | || ||| || | | ||||| ||||||||||| | | | Sbjct 9289 TAAAGCAGTGAACTAGATACCTACTACAAGCCAAGTAGCTAGGAAGAAGTGTAAAGAACG 9230 Query 8118 ACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAA 8176 | ||||| |||| | ||||| |||||||| |||| ||||| || ||| ||||||| | Sbjct 9229 AGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCAGGAGCAGCTA 9171 Query 8177 CAATATTATAGGTCTCTTC 8195 |||||||| || ||||| Sbjct 9170 TGATATTATAAGTTTCTTC 9152 >seq48412 Length=5542 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 8242 GTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCA 8301 || ||||| || | | ||| | || || ||||| | |||||||||||| || | || Sbjct 1925 GTTTCTCTCATCAAACTAGAGATTACCAAGGAACCATACATAGCACTGAATAGGAAGCCG 1984 Query 8302 CCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCT 8361 ||||| | ||| |||| ||| ||| || || || |||||||| ||||| ||||| || Sbjct 1985 CCGAATACACCAGCTATGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCC 2044 Query 8362 TGGAATACGAACATGAAGTTAAACGTACCA 8391 |||| ||| | |||||| || || |||||| Sbjct 2045 TGGAGTACAATCATGAAATTGAAAGTACCA 2074 >seq79347 Length=11633 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 8134 GCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCT 8193 ||||| ||||| || |||| ||||| || ||||||||||| || |||||||| || ||| Sbjct 731 GCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCT 672 Query 8194 TCTTCTTGACCAAACTTATAACC 8216 || |||||||| || ||||||| Sbjct 671 TCCTCTTGACCGAATCTATAACC 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613753063581720