Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq32040 163 8e-36 seq243164 141 3e-29 seq4239 136 1e-27 seq72959 131 5e-26 seq4237 129 2e-25 seq79347 89.7 1e-13 >seq32040 Length=2773 Score = 163 bits (180), Expect = 8e-36 Identities = 203/278 (73%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 41490 TTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTG 41549 ||||||||||| | |||||||||||||| | | || | || | |||||| | ||| Sbjct 2260 TTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTG 2319 Query 41550 GCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCT 41609 | || | ||||||||| || ||||||||| |||| | || || || ||| | || | Sbjct 2320 GTGTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTT 2379 Query 41610 GGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATC 41669 |||| |||||| || || |||||||| || ||||| |||||||| ||| | | || | Sbjct 2380 GGATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACC 2439 Query 41670 CGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACT 41729 | |||| || | ||||| ||| |||||| | || || || || || ||||||| Sbjct 2440 CAATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 2499 Query 41730 ACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATG 41767 |||| | || ||||||||||||||||| || |||||| Sbjct 2500 TCATGATTGTATTCCAGGCTGAGCACAACATCCTTATG 2537 >seq243164 Length=1121 Score = 141 bits (156), Expect = 3e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 42006 TTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGG 42065 |||| ||||| |||||||| |||||||| ||||| |||| | || | || |||| Sbjct 1119 TTCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGG 1060 Query 42066 CTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGA 42125 |||||||| | ||||||||||| || |||||||| | | | | | | || | || | Sbjct 1059 CTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAA 1000 Query 42126 TCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGC 42185 | || ||||||||||| ||| |||| ||||| |||||||| | || || |||||||| | Sbjct 999 TTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAAC 940 Query 42186 GGAACGCACACAACTTCCCGCTTGACCTTGC 42216 | || || || |||||||| || ||||| || Sbjct 939 GTAATGCTCATAACTTCCCTCTAGACCTAGC 909 >seq4239 Length=6188 Score = 136 bits (150), Expect = 1e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 41905 TCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTT 41964 ||| | |||||| ||||| ||||| | |||||||| || |||||||| || | ||||| Sbjct 1209 TCACGTGGAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTT 1268 Query 41965 CCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGT 42024 || ||||||||| || || ||||| ||| | | || ||||| || ||||| |||||||| Sbjct 1269 CCCATATGCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGT 1328 Query 42025 TGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTT 42084 |||||||| | ||| || | | || | | ||||||||||| | |||||||| Sbjct 1329 AGTAGGTATCTAGTTCACTACTTTAGGTATCGGCATTGTGGCTTTCAACCTAAATGGTTT 1388 Query 42085 CAACTTTAACCAATC 42099 ||| || |||||||| Sbjct 1389 CAATTTCAACCAATC 1403 >seq72959 Length=7288 Score = 131 bits (144), Expect = 5e-26 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 41935 TGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAG 41994 |||||| || |||||||| || | ||||||||||||||||| || || ||||| ||| Sbjct 819 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 760 Query 41995 TCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGT 42054 | | |||||||| || | ||| |||||||| |||||||| || || |||| | || | Sbjct 759 TTTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGATTCACTGCTTTAGGTAT 700 Query 42055 GTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099 || |||||||||||| | ||||||||||| || |||||||| Sbjct 699 CAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 655 >seq4237 Length=12380 Score = 129 bits (142), Expect = 2e-25 Identities = 148/197 (75%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 41905 TCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTT 41964 ||| | |||||| ||||| ||||| | ||||||| || |||||||| || | ||||| Sbjct 9145 TCACGTGGAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTT 9204 Query 41965 CCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGT 42024 |||||||||||| || || ||||| ||| | | || ||||| || ||| | |||| ||| Sbjct 9205 CCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTGT 9264 Query 42025 TGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTAC--CATGGCTTTCAACTTGAATGGT 42082 |||||||| | ||| || |||| || || || |||||||| ||| | |||||| Sbjct 9265 AGTAGGTATCTAGTTCACT--GCTTTAGGTATCAACATTATGGCTTTTAACCTAAATGGT 9322 Query 42083 TTCAACTTTAACCAATC 42099 ||||| || || ||||| Sbjct 9323 TTCAATTTCAATCAATC 9339 >seq79347 Length=11633 Score = 89.7 bits (98), Expect = 1e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||| | || |||||||||||||| ||||| ||||| || |||||||| || |||||| Sbjct 649 GGTTATAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 708 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAA 41982 || || | || |||||||||||||| || || Sbjct 709 GGCCGATTGATTTTCCAATATGCTAGTTTCAA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145738653159704