Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq32040 168 2e-37 seq243164 161 3e-35 seq4239 141 3e-29 seq72959 129 2e-25 seq4237 129 2e-25 seq152958 111 5e-20 >seq32040 Length=2773 Score = 168 bits (186), Expect = 2e-37 Identities = 204/278 (73%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 42545 TTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCG 42604 |||| |||||| | ||||| ||||| |||||| |||| | || | |||||| | | | Sbjct 2260 TTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTG 2319 Query 42605 GTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCT 42664 || | | |||| |||| || || |||||| || | ||| || || ||| | || | Sbjct 2320 GTGTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCCCTT 2379 Query 42665 GGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATC 42724 |||| |||||| || || || ||||| || || || ||||| || ||| | |||| | Sbjct 2380 GGATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACC 2439 Query 42725 CATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACT 42784 || |||| ||| | ||||| |||| |||||||| || ||||| ||||| ||||||| Sbjct 2440 CAATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACT 2499 Query 42785 TCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATG 42822 ||||| | || ||||||||||| || ||||| |||||| Sbjct 2500 TCATGATTGTATTCCAGGCTGAGCACAACATCCTTATG 2537 >seq243164 Length=1121 Score = 161 bits (178), Expect = 3e-35 Identities = 170/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 43061 TTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGG 43120 |||| || |||||||| || || || || ||||||||| || | || |||| ||||||| Sbjct 1119 TTCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGG 1060 Query 43121 CGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCA 43180 | || ||| | |||||||| || || |||||||| | ||||||| ||| || ||| | Sbjct 1059 CTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAA 1000 Query 43181 TCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGC 43240 | ||| |||||||||||| | |||||||| |||||||| | || || ||||| || | Sbjct 999 TTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAAC 940 Query 43241 GGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTT 43284 | ||||| ||||||||||| || || || || | || || ||| Sbjct 939 GTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTGTCGAAGTT 896 >seq4239 Length=6188 Score = 141 bits (156), Expect = 3e-29 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 42960 TCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTT 43019 ||| | ||| || |||||||| || | || || |||||||| ||||| || | ||||| Sbjct 1209 TCACGTGGAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTT 1268 Query 43020 CCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCG 43078 || |||||| | |||| || ||| ||| |||||||||||||| || || |||||||| | Sbjct 1269 CCCATATGC-TAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTG 1327 Query 43079 TTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTT 43138 | || || || | ||||||| || | || || | | | |||| || ||| | ||||||| Sbjct 1328 TAGTAGGTATCTAGTTCACTACTTTAGGTATCGGCATTGTGGCTTTCAACCTAAATGGTT 1387 Query 43139 TTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGT 43178 | || || |||||||| | |||||||||| ||| ||| Sbjct 1388 TCAATTTCAACCAATCCGTAATTGATAATCAAGATCGTGT 1427 >seq72959 Length=7288 Score = 129 bits (142), Expect = 2e-25 Identities = 138/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 42991 GCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTC 43049 || |||||||| ||||| || | |||||||||||||| | |||| || ||| ||| || Sbjct 818 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTC 760 Query 43050 TTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGT 43109 ||| || ||||| || | |||||||| || || || || || |||||| || | || | Sbjct 759 TTTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGATTCACTGCTTTAGGTAT 700 Query 43110 CAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCA 43169 ||| |||||||| || ||| | |||||||| || || |||||||| | ||||||| ||| Sbjct 699 CAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCATAGTTGATAGTCA 640 >seq4237 Length=12380 Score = 129 bits (142), Expect = 2e-25 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 42960 TCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTT 43019 ||| | ||| || |||||||| || | || || | |||||| ||||| || | ||||| Sbjct 9145 TCACGTGGAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTT 9204 Query 43020 CCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCG 43078 ||||||||| | |||| || ||| ||| ||||| |||||||| || || |||||| | Sbjct 9205 CCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTG 9263 Query 43079 TTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTT 43138 | || || || | ||||||| || | || ||| | |||||| |||||| | ||||||| Sbjct 9264 TAGTAGGTATCTAGTTCACTGCTTTAGGTATCAACATTATGGCTTTTAACCTAAATGGTT 9323 Query 43139 TTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCAT 43181 | || || || ||||| | |||||| ||| ||| ||| || Sbjct 9324 TCAATTTCAATCAATCCGTGATTGATAGTCAAGATCGTGTAAT 9366 >seq152958 Length=648 Score = 111 bits (122), Expect = 5e-20 Identities = 132/175 (75%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 42289 TTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTT-ATGTTGGGTGGTTTGGTGTGCT 42347 || ||||||||| | || || | || ||||||| | |||| ||||||||||| | Sbjct 644 TTCTGTAACTGGATAACCAGCACCGAAAATCGTCTTTTACATTGGATGGTTTGGTGTTTT 585 Query 42348 GATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCC 42406 |||||| |||| || | | | | | ||| |||||||| || ||||||||||| | Sbjct 584 GATGAT-CCCTACCTTATTGATCGCAACTTATGTATTTATTGTTGCCTTCATTGCTGCTC 526 Query 42407 CTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGG 42461 |||| |||| |||||||| |||||||||||||| ||||| ||||| || ||||| Sbjct 525 CTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGG 471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143065778447548