Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq243164 147 6e-31 seq32040 116 1e-21 seq4239 114 4e-21 seq4237 111 5e-20 seq72959 109 2e-19 >seq243164 Length=1121 Score = 147 bits (162), Expect = 6e-31 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 909 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 968 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || || || | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 969 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 1028 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | | Sbjct 1029 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 1088 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAA 26087 || || || || || ||||||| ||| |||| Sbjct 1089 CAGATACCTACTACAGGCCAAGCAGCTAGAA 1119 >seq32040 Length=2773 Score = 116 bits (128), Expect = 1e-21 Identities = 193/279 (69%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 26323 GTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGAT 26382 || ||| || || || || || || |||||||| | ||| ||||| ||||||||||| || Sbjct 2540 GTACATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAAT 2481 Query 26383 ACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGC 26442 || |||||||| |||| |||||| | ||| || | || || | ||||| || || Sbjct 2480 TCCTAGAGGCATACCATTCAAAAAACTTCTTTGACCAATTGGGTAGATCAAGAAAACAGC 2421 Query 26443 GAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCT 26502 ||| || | | || |||| |||||||||| ||||| || | ||| || || | Sbjct 2420 AGTAGCAGCTGCAACAGGAGCTGAATATGCAACATCAATCCAAGGGCGCATACCCAGACG 2361 Query 26503 GTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGAT 26562 | || | |||||||| | || || ||||| || | ||||||||| | | Sbjct 2360 GAAACTAAATTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAAC 2301 Query 26563 AATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTC 26601 ||| || | ||| || ||||| ||||||| ||| || || Sbjct 2300 AATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATC 2262 >seq4239 Length=6188 Score = 114 bits (126), Expect = 4e-21 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 25984 ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||| | ||| || ||||| || || |||||||||||||| || |||| ||| |||||| Sbjct 1413 ATCAATTACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCACAATGCCGATACC 1354 Query 26044 CATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACG 26103 | || || | | | || || || || ||||||| ||| || ||||| || | |||||| Sbjct 1353 TAAAGTAGTGAACTAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACG 1294 Query 26104 GCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGAC 26163 || || ||||| ||||| | || || |||| ||||| || || || ||||| | Sbjct 1293 AGAATTGTTGAAACTAGCATATGGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTAT 1234 Query 26164 AATATTATATGTCTCTTC 26181 |||||||| || ||||| Sbjct 1233 GATATTATAAGTTTCTTC 1216 >seq4237 Length=12380 Score = 111 bits (122), Expect = 5e-20 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 25991 ACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGAT 26050 || || || || || || ||||||||||||||||| ||||| || |||||| | || Sbjct 9342 ACGGATTGATTGAAATTGAAACCATTTAGGTTAAAAGCCATAATGTTGATACCTAAAGCA 9283 Query 26051 GTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTA 26110 || | | | || || || || |||||||||| || ||||| || | |||||| || Sbjct 9282 GTGAACTAGATACCTACTACAAGCCAAGTAGCTAGGAAGAAGTGTAAAGAACGAGAATTG 9223 Query 26111 TTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTA 26170 || ||||| ||||| || || || |||| ||||| || || | ||||| | |||||| Sbjct 9222 TTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCAGGAGCAGCTATGATATTA 9163 Query 26171 TATGTCTCTTC 26181 || || ||||| Sbjct 9162 TAAGTTTCTTC 9152 >seq72959 Length=7288 Score = 109 bits (120), Expect = 2e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 25984 ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||| |||| || ||||| || || |||||||||||||| || ||||| |||| |||||| Sbjct 645 ATCAACTATGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 704 Query 26044 CATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACG 26103 | || || | || || || || || ||||||| | | || |||||||| | |||||| Sbjct 705 TAAAGCAGTGAATCAGATACCTACTACAGGCCAAGCAACTAGGAAGAAATGTAAAGAACG 764 Query 26104 GCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCA 26158 || || ||||| ||||| || || || |||| ||||| || || || ||| Sbjct 765 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCA 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147231380325920