Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq243164 150 2e-31 seq32040 129 7e-25 seq4239 116 4e-21 seq4237 104 3e-17 seq48412 93.3 5e-14 seq152958 91.5 2e-13 >seq243164 Length=1121 Score = 150 bits (166), Expect = 2e-31 Identities = 168/222 (76%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 155738 TCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGA 155797 ||||| | ||||| |||||||| || | |||||| |||||| | ||| | || | Sbjct 1121 TCTTC-TAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTA 1063 Query 155798 TGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTA 155854 |||| |||||||| || |||||||| |||||||| || ||||| || |||| ||| Sbjct 1062 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA---TAGTCAAGGTC 1006 Query 155855 AAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGC 155914 || || ||| ||||| || ||| |||| || ||| |||||||||||||| |||| Sbjct 1005 GTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGC 946 Query 155915 ACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCTG 155956 | || ||||| ||||| ||||||||||| ||||| ||||||| Sbjct 945 ATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTG 904 >seq32040 Length=2773 Score = 129 bits (142), Expect = 7e-25 Identities = 199/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 155222 CTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTA 155281 || ||||||| ||||| ||||| || ||||||| | || | || | |||||| | Sbjct 2257 CTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTAC 2316 Query 155282 TCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTC 155341 | || | | ||| |||||| |||||||| || || |||||| || ||||| | Sbjct 2317 TTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAATTTAGTTTCCGTCTGGGTATGCGCC 2376 Query 155342 CTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTT 155401 ||||||| ||||||||| || || || || | ||||| ||||| ||| | | | Sbjct 2377 CTTGGATTGATGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCT 2436 Query 155402 ATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTA 155461 | || | |||||| | ||| | ||| |||||||| || || ||||||||||| | Sbjct 2437 ACCCAATTGGTCAAAGAAGTTTTTTGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCA 2496 Query 155462 ACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCAC 155505 ||| ||| | || ||||| || || ||||| ||||||||| || Sbjct 2497 ACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGTAC 2540 >seq4239 Length=6188 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 155647 GAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTAT 155706 |||||||||||||| || | ||||||||||| || || || || | ||||||| ||| Sbjct 1216 GAAGAAACTTATAATATCATAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCCATAT 1275 Query 155707 GCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGC 155766 || |||||||| || | | | ||||||||||| ||||| |||||||| || | Sbjct 1276 GCTAGTTTCAACAATTCTCGTTCTTTGCACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGT 1335 Query 155767 ATCTGGGCAACTGCTATGGGTGT-GTCAACGATGGCATTCAACCTTAACGGTTTCAACTT 155825 |||| | ||| || | ||| | | || | |||| |||||||| || |||||||| || Sbjct 1336 ATCTAGTTCACTACTTTAGGTATCGGCATTG-TGGCTTTCAACCTAAATGGTTTCAATTT 1394 Query 155826 CAACCAGTCTGTA 155838 |||||| || ||| Sbjct 1395 CAACCAATCCGTA 1407 >seq4237 Length=12380 Score = 104 bits (114), Expect = 3e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 155647 GAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTAT 155706 |||||||||||||| || | ||||||| ||| || || || || | |||||||| ||| Sbjct 9152 GAAGAAACTTATAATATCATAGCTGCTCCTGGTTATTTTGGCCGATTGATCTTCCAATAT 9211 Query 155707 GCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGC 155766 || |||||||| || | | | ||||||||||| ||| | |||| ||| || | Sbjct 9212 GCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTACTTGGCTTGTAGTAGGT 9271 Query 155767 ATCTGGGCAACTGCTATGGGTGTGTCAAC--GATGGCATTCAACCTTAACGGTTTCAACT 155824 |||| | |||||| | | || ||||| ||||| || ||||| || |||||||| | Sbjct 9272 ATCTAGTTCACTGCTTTAG--GTATCAACATTATGGCTTTTAACCTAAATGGTTTCAATT 9329 Query 155825 TCAACCAGTCTGT 155837 |||| || || || Sbjct 9330 TCAATCAATCCGT 9342 >seq48412 Length=5542 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 155443 GGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATG 155502 || ||| ||||||||| || | ||| | || |||| || || ||||| ||||||||| Sbjct 2082 GGAATCCGTGGTACTTTCAATTTCATGATTGTACTCCAGGCTGAGCACAACATCCTTATG 2023 Query 155503 CACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATG 155562 ||||| || |||||| | || |||| ||||| ||||| || | || ||| ||||||| Sbjct 2022 CACCCATTTCACATGTTAGGCATAGCTGGTGTATTCGGCGGCTTCCTATTCAGTGCTATG 1963 Query 155563 CACGGTTCATTGGT 155576 | ||||| ||||| Sbjct 1962 TATGGTTCCTTGGT 1949 >seq152958 Length=648 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 155011 GGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCT-GCTGCTACATGC-TTCATTG 155068 || ||||| |||||| | ||||||||| ||| | | | || || ||| || |||| Sbjct 601 GGATGGTTTGGTGTTTTGATGATCCCTA-CCTTATTGATCGCAACTT-ATGTATTTATTG 544 Query 155069 TCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTT 155128 | |||||||||||||| ||||| |||| |||||||||||||||||||| || |||| | Sbjct 543 TTGCCTTCATTGCTGCTCCTCCAATAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 484 Query 155129 CTTTAATGTATGG 155141 || || | ||||| Sbjct 483 CTCTACTTTATGG 471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582832132129560