Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq32040 143 8e-30 seq243164 120 9e-23 seq4237 91.5 4e-14 seq72959 84.2 6e-12 seq48412 80.6 8e-11 >seq32040 Length=2773 Score = 143 bits (158), Expect = 8e-30 Identities = 199/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 40979 GTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGAT 41038 || ||| || |||||||| || || ||||| |||| |||||||||||| || ||| || Sbjct 2540 GTACATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAAT 2481 Query 41039 TCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGC 41098 ||||| ||||||||||| | ||| | ||||| | ||| || | ||||| ||||| Sbjct 2480 TCCTAGAGGCATACCATTCAAAAAACTTCTTTGACCAATTGGGTAGATCAAGAAAACAGC 2421 Query 41099 TAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCT 41158 ||| |||| | ||||||| ||||| ||| ||||| || | |||||| || | Sbjct 2420 AGTAGCAGCTGCAACAGGAGCTGAATATGCAACATCAATCCAAGGGCGCATACCCAGACG 2361 Query 41159 GTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGAC 41218 | | || |||||||| | ||| ||| ||||| || | ||| ||||| | || Sbjct 2360 GAAACTAAATTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAAC 2301 Query 41219 AATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTC 41257 ||| || | ||| || ||||||||||||| ||| || || Sbjct 2300 AATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATC 2262 >seq243164 Length=1121 Score = 120 bits (132), Expect = 9e-23 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| | Sbjct 904 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 963 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | |||| || ||||||||| ||| ||| || ||| | | || |||| Sbjct 964 GGTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 1023 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || |||||||| ||||| ||||||||||| ||||| | | | Sbjct 1024 CGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAG 1083 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAA 40743 | | ||| || || | || || ||||| | |||| Sbjct 1084 TGAACCAGATACCTACTACAGGCCAAGCAGCTAGAA 1119 >seq4237 Length=12380 Score = 91.5 bits (100), Expect = 4e-14 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40647 ACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAG 40706 || || || || || || |||||||| ||||||||||||||| | ||||| | | Sbjct 9342 ACGGATTGATTGAAATTGAAACCATTTAGGTTAAAAGCCATAATGTTGATACCTAAAGCA 9283 Query 40707 GTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 || | | | || || | || | ||| | | || |||||||||| | ||| |||| Sbjct 9282 GTGAACTAGATACCTACTACAAGCCAAGTAGCTAGGAAGAAGTGTAAAGAACGAGAATTG 9223 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 ||||| ||||||||| || || | || ||||| ||||| | ||||||| ||| ||| Sbjct 9222 TTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCAGGAGCAGCTATGATATTA 9163 Query 40827 TAAGTCTC 40834 ||||| || Sbjct 9162 TAAGTTTC 9155 >seq72959 Length=7288 Score = 84.2 bits (92), Expect = 6e-12 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 40641 TCTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCC 40700 || |||| || ||||| || || |||||||| ||||| ||||||||||| ||||| Sbjct 646 TCAACTATGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCT 705 Query 40701 ATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGG 40760 | | || | || || || | || || ||||| | || ||||| |||| | ||| Sbjct 706 AAAGCAGTGAATCAGATACCTACTACAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGA 765 Query 40761 CTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCA 40814 ||||||||| ||||||||| || || | || ||||| ||||| || ||| Sbjct 766 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCA 819 >seq48412 Length=5542 Score = 80.6 bits (88), Expect = 8e-11 Identities = 79/102 (77%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || || || || || || | ||| | ||| || ||||||||||| || |||||||| || Sbjct 1982 CCGCCGAATACACCAGCTATGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 2041 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCT 41042 || |||| |||| |||||| ||||| || |||| ||||||| Sbjct 2042 GCCTGGAGTACAATCATGAAATTGAAAGTACCACGGATTCCT 2083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143234826609534