Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq243164 150 2e-31 seq32040 147 2e-30 seq4239 131 2e-25 seq72959 125 8e-24 seq4237 123 3e-23 seq48412 116 4e-21 >seq243164 Length=1121 Score = 150 bits (166), Expect = 2e-31 Identities = 168/222 (76%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 67357 CAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAA 67416 ||||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| |||| Sbjct 904 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 963 Query 67417 GTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAA 67473 | || | |||| || || ||||| ||| ||| || || |||| |||| Sbjct 964 GGTTAGCACGATTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAA 1020 Query 67474 CGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTG 67533 | |||||||||||||| |||||||| || |||||||| |||||||| | ||| | | Sbjct 1021 CTACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAG 1080 Query 67534 CAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGA 67575 ||||||||||||| | || ||||| | ||||| | ||||| Sbjct 1081 CAGTGAACCAGATACCTACTACAGGCCAAGCAGCTA-GAAGA 1121 >seq32040 Length=2773 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 67808 GTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAAT 67867 || |||||||||||||||||| || ||||| || | |||| |||| |||||||||||||| Sbjct 2540 GTACATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAAT 2481 Query 67868 ACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGC 67927 || |||||||| | | | ||| | |||||| | || |||| |||||| ||||| Sbjct 2480 TCCTAGAGGCATACCATTCAAAAAACTTCTTTGACCAATTGGGTAGATCAAGAAAACAGC 2421 Query 67928 GAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACG 67987 || || | || ||||| || ||||| ||| |||||||| |||||||| ||||| Sbjct 2420 AGTAGCAGCTGCAACAGGAGCTGAATATGCAACATCAATCCAAGGGCGCATACCCAGACG 2361 Query 67988 GTAAGAAAGTTCCCACTGACGACC 68011 | || || |||||||| |||||| Sbjct 2360 GAAACTAAATTCCCACTCACGACC 2337 >seq4239 Length=6188 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 |||| |||||||||||||| |||||||| || |||||||| |||| | | | ||| Sbjct 1412 TCAATTACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCACAATGCCGATACCT 1353 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | | ||||||| |||| | || ||||| | ||||| ||||||||||| | | | Sbjct 1352 AAAGTAGTGAACTAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGCAAAGAACGA 1293 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 || ||||||||| ||||| |||||||||| || || || || ||||||||||| | Sbjct 1292 GAATTGTTGAAACTAGCATATGGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTATG 1233 Query 67650 ATGTTGTAAGTCTCTTC 67666 || || ||||| ||||| Sbjct 1232 ATATTATAAGTTTCTTC 1216 >seq72959 Length=7288 Score = 125 bits (138), Expect = 8e-24 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| | |||||||||||| |||||||| || |||||||| |||||||| | ||| Sbjct 646 TCAACTATGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCT 705 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | |||||||| ||||| | || ||||| | ||| | |||||||| || | | | Sbjct 706 AAAGCAGTGAATCAGATACCTACTACAGGCCAAGCAACTAGGAAGAAATGTAAAGAACGA 765 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCA 67643 || ||||||||| ||||| ||||||||||| || || || || ||||||||| Sbjct 766 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCA 819 >seq4237 Length=12380 Score = 123 bits (136), Expect = 3e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATA--GTTGACACAC 67527 |||| |||||||| ||||| |||||||| || ||||| || |||||| ||||| || Sbjct 9348 TCAATCACGGATTGATTGAAATTGAAACCATTTAGGTTAAAAGCCATAATGTTGATAC-- 9291 Query 67528 CCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTC 67587 | | ||||||||| |||| | || ||| | | | ||| ||||||||||| | | | Sbjct 9290 CTAAAGCAGTGAACTAGATACCTACTACAAGCCAAGTAGCTAGGAAGAAGTGTAAAGAAC 9231 Query 67588 TTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAA 67647 || ||||||||| ||||| ||||||||||| || || || || ||| ||||||| | Sbjct 9230 GAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCAGGAGCAGCTA 9171 Query 67648 CAATGTTGTAAGTCTCTTC 67666 || || ||||| ||||| Sbjct 9170 TGATATTATAAGTTTCTTC 9152 >seq48412 Length=5542 Score = 116 bits (128), Expect = 4e-21 Identities = 118/151 (78%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 67713 GTTTCTCTGATAAGAGAAGA-AGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACC 67771 |||||||| || | | ||| | || |||| ||||| | ||||||||| || || | || Sbjct 1925 GTTTCTCTCATCAAACTAGAGATTACCAAG-GAACCATACATAGCACTGAATAGGAAGCC 1983 Query 67772 ACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGC 67831 ||||||||||| |||| || | ||| || |||||||||||||||||||||||||| || Sbjct 1984 GCCGAATACACCAGCTATGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGC 2043 Query 67832 TTGGAACACGAACATGTAGTTAAAAGTACCA 67862 |||| || | |||| | || ||||||||| Sbjct 2044 CTGGAGTACAATCATGAAATTGAAAGTACCA 2074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565005398753160