Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq107102 93.3 8e-14 seq2978 93.3 8e-14 seq115376 91.5 3e-13 seq112091 86.0 1e-11 seq117103 84.2 4e-11 >seq107102 Length=7485 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || | |||| || | |||||| ||||||||| |||| | || || | Sbjct 3741 CGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAATATTATAATCGGCCAGTGTCCTCCCA 3800 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| || ||||||||||| | ||||| || || ||||| || || || ||| Sbjct 3801 TCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTA 3860 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| || || || ||| || || || ||||| || Sbjct 3861 TCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAACTTTCCACCTCCAGAGTGATG 3920 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || || || ||||| || |||||| Sbjct 3921 GTCTTACCGGTCAGAGTCTTGACAAAAATCTGCATT 3956 >seq2978 Length=2151 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || | |||| || | |||||| ||| ||||| |||| | || || | Sbjct 246 CGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAATGTTATAATCGGCCAGTGTCCTCCCA 187 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| || ||||||||||| | ||||| || || ||||| || || || ||| Sbjct 186 TCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTA 127 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| ||| || || ||| || || || ||||| || Sbjct 126 TCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCTGAACTTTCCACCTCCAGAGTGATG 67 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || || || ||||| || |||||| Sbjct 66 GTCTTACCGGTCAGAGTCTTGACAAAAATCTGCATT 31 >seq115376 Length=10371 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | ||| || || |||| || | || | ||||| || |||||||| Sbjct 7440 ATTCCACCCCGCAAACGGAGCACCAAGTGGAGAGTGGATTCTTTCTGGATGTTATAGTCT 7381 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| || || || | || ||||| |||||||| | ||||| || || || Sbjct 7380 GCAAGCGTCCTCCCGTCTTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCCGGT 7321 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || ||||| || || | || | ||| ||| || || || |||| Sbjct 7320 GGAATTCCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCA 7261 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || || || || || ||||| |||||||| Sbjct 7260 ACTTCTAGGGTAATTGTCTTCCCAGTGAGGGTCTTCACAAAGATTTGCAT 7211 >seq112091 Length=14418 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | ||| || || |||| || | || | ||||| || |||||||| Sbjct 12246 ATTCCACCCCGCAAACGGAGCACCAAGTGGAGAGTGGATTCTTTCTGGATGTTATAGTCT 12305 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| || || || | || ||||| |||||||| | ||||| || || || Sbjct 12306 GCAAGCGTCCTCCCGTCTTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCCGGT 12365 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| || || | || | ||| ||| || || || |||| Sbjct 12366 GGAATACCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCA 12425 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || || || || || ||||| |||||||| Sbjct 12426 ACTTCTAGGGTAATTGTCTTCCCAGTGAGGGTCTTCACAAAGATTTGCAT 12475 >seq117103 Length=17306 Score = 84.2 bits (92), Expect = 4e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 193148 AAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATC 193207 ||| |||| |||| || | |||||| || ||||| || | | || || ||| Sbjct 8045 AAGGACCAAGTGCAGAGTTGACTCTTTCTGGATGTTATAATCAGCCAGTGTCCTCCCATC 8104 Query 193208 GTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 193267 || | ||| || ||||||||||| | ||||| || || ||||| || || || || || Sbjct 8105 TTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTC 8164 Query 193268 TTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGT 193327 || || || | || | ||| ||| || || ||| ||| || || ||||| || || Sbjct 8165 CTGGATCTTTGCCTTCACATTGTCAATGGTGTCTGAACTCTCCACCTCCAGAGTGATGGT 8224 Query 193328 TTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| || || || || || ||||| || |||||| Sbjct 8225 TTTTCCGGTCAGAGTCTTGACAAAAATCTGCATT 8258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896573072434320