Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20camaldulensis_20[genbank_20GCA_5F000260855.1_202012-01- 23] 274,001 sequences; 654,922,307 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq117103 95.1 2e-14 seq117102 95.1 2e-14 seq107102 95.1 2e-14 seq115376 86.0 1e-11 seq112091 86.0 1e-11 >seq117103 Length=17306 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || || || | || | || || || ||||||||| Sbjct 8940 ATGCCACCCCTGAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATAATCA 8999 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || ||| |||| || | || || ||||||||||| | ||||| || ||||| Sbjct 9000 GCCAAAGTGCGTCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCAGGG 9059 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || || ||| ||||| || | ||||| ||| Sbjct 9060 GGGATTCCCTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATTGTGTCTGAGCTTTCG 9119 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | ||| || ||||| Sbjct 9120 ACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAAATTTGCAT 9169 >seq117102 Length=5212 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || || || | || | || || ||| || || || Sbjct 309 ATGCCACCTCTGAGACGAAGCACCAAGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCC 368 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | |||||| || || || || || ||||| ||||| || Sbjct 369 GCCAGAGTTCGGCCATCCTCAAGTTGTTTGCCCGCGAAAATCAACCTCTGCTGATCTGGG 428 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || ||||| ||||||||| || | || || ||| Sbjct 429 GGAATTCCTTCCTTGTCCTGGATTTTCGCCTTTACATTATCGATGGTGTCCGAACTTTCA 488 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || || || || | || || | |||||||||||| Sbjct 489 ACCTCTAGGGTAATAGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 538 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || ||||| | || | || || || ||||||||| Sbjct 537 ATGCCACCCCTGAGACGGAGAACCAAATGAAGGGTGGATTCCTTCTGAATGTTATAATCA 596 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || ||| |||| || | || || ||||||||||| | ||||| || ||||| Sbjct 597 GCCAAAGTGCGTCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCAGGG 656 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || || ||| ||||| || | ||||| ||| Sbjct 657 GGGATTCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCTGAGCTTTCG 716 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | || || ||||| Sbjct 717 ACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACGAAAATTTGCAT 766 >seq107102 Length=7485 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || || || | || | || || |||| || || || Sbjct 4638 ATGCCACCTCTGAGACGAAGCACCAAGTGGAGTGTTGATTCCTTCTAGATGTTGTAGTCC 4697 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | ||| || || || || || || ||||| ||||| || Sbjct 4698 GCCAGAGTTCGGCCATCCTCAAGTTGCTTGCCCGCGAAAATCAACCTCTGCTGATCTGGG 4757 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || ||||| ||||||||| || | || || ||| Sbjct 4758 GGAATTCCTTCCTTGTCCTGGATTTTCGCCTTTACATTATCGATGGTGTCCGAACTTTCA 4817 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || || || || | || || | |||||||||||| Sbjct 4818 ACCTCTAGGGTAATAGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 4867 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || ||||| | || | || || || ||||||||| Sbjct 4866 ATGCCTCCCCTGAGACGGAGAACCAAATGAAGGGTGGATTCCTTCTGAATGTTATAATCA 4925 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || ||| |||| || | || || ||||||||||| | ||||| || ||||| Sbjct 4926 GCCAAAGTGCGTCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCAGGG 4985 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || || ||| ||||| || | ||||| ||| Sbjct 4986 GGGATTCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCTGAGCTTTCG 5045 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | || || ||||| Sbjct 5046 ACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACGAAAATTTGCAT 5095 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | ||||| || | ||| | |||||| ||||||||||| | | ||| | Sbjct 3738 AGACGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAATATTATAATCGGCCAGTGTCCTC 3797 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| |||| ||| || || ||||| || | ||||| || || || || || || || Sbjct 3798 CCATCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCC 3857 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 ||||| || || || || ||||| || | ||||| ||| || || ||||| Sbjct 3858 TTATCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAACTTTCCACCTCCAGAGTG 3917 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||||| || | || || | ||| ||||||||| Sbjct 3918 ATGGTCTTACCGGTCAGAGTCTTGACAAAAATCTGCATT 3956 >seq115376 Length=10371 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || || || | || | ||| || || ||||||||| Sbjct 7212 ATGCCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCA 7153 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||||| |||| |||| || || ||||||||||| | ||||| || || || Sbjct 7152 GCCAAGGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGA 7093 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| ||| |||||| || | || || ||| Sbjct 7092 GGGATGCCTTCCTTGTCCTGGATTTTTGCTTTCACATTATCAATTGTGTCGGAGCTTTCC 7033 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| | || || | ||| || ||||| Sbjct 7032 ACCTCGAGGGTGATTGTCTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 6983 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || | || | || || || | ||||| |||||| ||| ||||| || Sbjct 7668 ATACCACCCCTCAACCGGAGCACCAAGTGGAGAGTAGACTCTTTCTGGATGTTATAGTCT 7609 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| || | || || ||||||||||| | |||||| || || || Sbjct 7608 GCAAGAGTCCTGCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGGTCCGGG 7549 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| ||||| || ||||| || | || || ||| Sbjct 7548 GGAATACCCTCCTTGTCTTGGATTTTCGCCTTAACATTGTCAATGGTGTCGGAGCTTTCC 7489 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||| ||||| || ||||| | || || | ||| ||||||||| Sbjct 7488 ACCTCCAAAGTTATGGTCTTCCCAGTAAGCGTCTTCACAAAAATCTGCATT 7438 >seq112091 Length=14418 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || || || | || | ||| || || ||||||||| Sbjct 12474 ATGCCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCA 12533 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||||| |||| |||| || || ||||||||||| | ||||| || || || Sbjct 12534 GCCAAGGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCTGGA 12593 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| ||| |||||| || | || || ||| Sbjct 12594 GGGATGCCTTCCTTGTCCTGGATTTTTGCTTTCACATTATCAATTGTGTCGGAGCTTTCC 12653 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| | || || | ||| || ||||| Sbjct 12654 ACCTCGAGGGTGATTGTCTTGCCAGTAAGAGTCTTCACAAAAATTTGCAT 12703 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || | || | || || || | ||||| |||||| ||| ||||| || Sbjct 12018 ATACCACCCCTCAACCGGAGCACCAAGTGGAGAGTAGACTCTTTCTGGATGTTATAGTCT 12077 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | |||| || | || || ||||||||||| | |||||| || || || Sbjct 12078 GCAAGAGTCCTGCCATCTTCAAGCTGCTTGCCAGCAAAGATGAGTCTCTGCTGGTCCGGG 12137 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| ||||| || ||||| || | || || ||| Sbjct 12138 GGAATACCCTCCTTGTCTTGGATTTTCGCCTTAACATTGTCAATGGTGTCGGAGCTTTCC 12197 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||| ||||| || ||||| | || || | ||| ||||||||| Sbjct 12198 ACCTCCAAAGTTATGGTCTTCCCAGTAAGCGTCTTCACAAAAATCTGCATT 12248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981023847286350